CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s11040
(
Populus trichocarpa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
POPTR_0002s11040
T255806_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.913
0.913
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.913
0.913
Q9FVN1_MAIZE
M10982_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.804
0.804
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.761
0.761
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.761
0.761
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.739
0.739
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.739
0.739
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.739
0.739
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.739
0.739
Q9AR49_MAIZE
M10980_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.739
0.739
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.739
0.739
MADS2
M10966_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.739
0.739
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.717
0.717
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.717
0.717
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.717
0.717
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.717
0.717
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.717
0.717
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s11040.1
MADS box
6
51
IHSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDF
Links
Other
MADS box
family TFs
Other
Populus trichocarpa
TFs
506 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy