CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0004s13600
(
Populus trichocarpa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
POPTR_0004s13600
T255820_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0004s13600.1
MADS box
10
57
MVKDSNSRQVTFSKRRTGVFKKANELATLCGVQIAIIVFSPGGKPFSF
Links
Other
MADS box
family TFs
Other
Populus trichocarpa
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.979
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.979
TCM_029518
Theobroma cacao
TCM_029518
I
0.896
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.875
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.875
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.875
29693.m002039
Ricinus communis
29693.m002039
I
0.875
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.875
Pm030655
Prunus mume
Pm030655
I
0.875
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.875
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.854
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.854
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.833
MDP0000274606
Malus domestica
MDP0000274606
N
0.833
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.833
MDP0000120467
Malus domestica
MDP0000120467
N
0.812
Cla019897
Citrullus lanatus
Cla019897
N
0.812
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.792
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.792
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.792
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.771
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.771
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.771
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.771
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.771
Ca_05023
Cicer arietinum
Ca_05023
I
0.771
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.771
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.750
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.750
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.750
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.750
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.750
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.750
Ca_24185
Cicer arietinum
Ca_24185
I
0.750
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.750
AGL29
Arabidopsis thaliana
AT2G34440
I
0.750
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.729
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.729
Bra021910
Brassica rapa
Bra021910
I
0.729
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.729
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.729
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.729
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.729
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.729
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.729
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.729
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.729
LjSGA_085239.1
Lotus japonicus
LjSGA_085239.1
N
0.711
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.708
orange1.1g036705m.g
Citrus sinensis
orange1.1g036705m.g
N
0.708
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.708
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.708
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.708
mgf018529m
Mimulus guttatus
mgf018529m
N
0.708
TCM_040735
Theobroma cacao
TCM_040735
N
0.708
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.708
mgf024307m
Mimulus guttatus
mgf024307m
N
0.708
Ciclev10030387m.g
Citrus clementina
Ciclev10030387m.g
N
0.708
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.708
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.708
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.708
MDP0000168914
Malus domestica
MDP0000168914
N
0.708