POPTR_0004s13600 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0004s13600 T255820_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s13600.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002039 Ricinus communis 29693.m002039 I 0.875
AGL29 Arabidopsis thaliana AT2G34440 I 0.750
Bo4g182590 Brassica oleracea Bo4g182590 I 0.729
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
Bra021910 Brassica rapa Bra021910 I 0.729
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.750
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.750
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.833
Ca_05023 Cicer arietinum Ca_05023 I 0.771
Ca_24185 Cicer arietinum Ca_24185 I 0.750
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.729
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.875
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.708
Cla019897 Citrullus lanatus Cla019897 N 0.812
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.792
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.875
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.854
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.875
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.771
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.750
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.771
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.792
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.729
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.729
GLYMA08G03793 Glycine max GLYMA08G03793 N 0.750
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.729
GLYMA08G38880 Glycine max GLYMA08G38880 I 0.729
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.771
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.708
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.833
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.708
LjSGA_085239.1 Lotus japonicus LjSGA_085239.1 N 0.711
Lus10011787.g Linum usitatissimum Lus10011787.g N 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.708
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.854
MDP0000120467 Malus domestica MDP0000120467 N 0.812
MDP0000168914 Malus domestica MDP0000168914 N 0.708
MDP0000274606 Malus domestica MDP0000274606 N 0.833
mgf018529m Mimulus guttatus mgf018529m N 0.708
mgf024307m Mimulus guttatus mgf024307m N 0.708
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.729
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.771
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.708
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.771
MTR_8g046350 Medicago truncatula MTR_8g046350 N 0.729
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.750
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.708
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.875
Pm030655 Prunus mume Pm030655 I 0.875
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.875
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.979
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.979
TCM_029518 Theobroma cacao TCM_029518 I 0.896
TCM_040735 Theobroma cacao TCM_040735 N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.729