POPTR_0005s12000 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0005s12000 T255824_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.917 0.917
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.812 0.812
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.812 0.812
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.792 0.792
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.771 0.771
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.750 0.750
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s12000.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.979
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.958
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.958
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.958
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.958
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.938
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.938
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.917
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.917
MDP0000184294 Malus domestica MDP0000184294 I 0.917
MDP0000315938 Malus domestica MDP0000315938 I 0.917
29782.m000119 Ricinus communis 29782.m000119 I 0.917
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.917
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.896
MDP0000133037 Malus domestica MDP0000133037 I 0.896
MDP0000224779 Malus domestica MDP0000224779 I 0.896
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.896
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.896
TCM_000266 Theobroma cacao TCM_000266 I 0.896
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.896
Pm026712 Prunus mume Pm026712 I 0.894
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.875
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.875
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.875
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.875
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.875
Ca_01994 Cicer arietinum Ca_01994 I 0.875
Cla021117 Citrullus lanatus Cla021117 I 0.854
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.854
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.854
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.854
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.854
AP3 Vitis vinifera VIT_18s0001g13460 I 0.833
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.833
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.833
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.833
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.833
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.833
Ca_04909 Cicer arietinum Ca_04909 I 0.833
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.833
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.812
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.812
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.812
AP3 Arabidopsis thaliana AT3G54340 D 0.812
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.812
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.812
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.812
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.812
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.812
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.792
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.792
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
mgf015533m Mimulus guttatus mgf015533m I 0.792
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.792
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.792
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.792
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.792
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.792
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.792
Bo4g120010 Brassica oleracea Bo4g120010 I 0.792
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.792
Bra007067 Brassica rapa Bra007067 I 0.792
Bra014822 Brassica rapa Bra014822 I 0.792
Pm006266 Prunus mume Pm006266 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
Bo8g083600 Brassica oleracea Bo8g083600 I 0.792
TCM_034148 Theobroma cacao TCM_034148 I 0.771
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.771
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.771
mgf000046m Mimulus guttatus mgf000046m I 0.766
OBART06G27230 Oryza barthii OBART06G27230 I 0.750
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.750
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.750
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.750
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.750
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.750
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.750
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.750
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.750
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.750
MADS16 Oryza sativa OS06G0712700 D 0.750
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.750
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.750
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.750
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.750
Si007221m.g Setaria italica Si007221m.g I 0.750
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.750
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.750
OB06G35020 Oryza brachyantha OB06G35020 I 0.750
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.750
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.750
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.750
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.750
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.750
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.729
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.729
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.729
TCM_035212 Theobroma cacao TCM_035212 I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.729
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.708
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.708
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.708
Pm004718 Prunus mume Pm004718 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.708
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.708
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.708
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.708
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.708
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.708
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.708
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.708