AGL15 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0009s06060 T255849_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN

NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.812 0.812
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH

DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.812 0.812
AGL15
M10927_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.812 0.812
AGL15
M10928_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.812 0.812
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN

NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.771 0.771
Q7X9I6_MALDO
M11023_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_02
0.771 0.771
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.771 0.771
Q38742_ANTMA
M11000_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.771 0.771
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.750 0.750
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.750 0.750
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.750 0.750
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.729 0.729
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.729 0.729
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.729 0.729
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB

VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.729 0.729
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN

NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.729 0.729
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA

TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.729 0.729
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.729 0.729
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.729 0.729
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.729 0.729
SEP1
M10929_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.729 0.729
SEP1
M10930_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.729 0.729
SEP2
M10916_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL4_01
0.729 0.729
SEP3
M10902_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.729 0.729
Q9LEI1_HORVU
M10984_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM7_01
0.729 0.729
MLOC_61901
M10964_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.729 0.729
AGL9_PETHY
M10993_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.729 0.729
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.729 0.729
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.729 0.729
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.729 0.729
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.729 0.729
Q9ATF2_PETHY
M11014_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP5_01
0.729 0.729
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.729 0.729
O82084_MALDO
M11018_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.729 0.729
MADS1
M10969_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_02
0.729 0.729
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.729 0.729
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.729 0.729
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.729 0.729
Q9FR84_MAIZE
M10981_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.729 0.729
O82695_MALDO
M11019_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_01
0.729 0.729
MADS5
M10970_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.729 0.729
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.729 0.729
MADS7
M10975_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.729 0.729
MADS8
M10976_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.729 0.729
Q9SBA6_MALDO
M11028_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.729 0.729
AP1
M10905_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.729 0.729
Q41829_MAIZE
M10977_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.729 0.729
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.708 0.708
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.708 0.708
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.708 0.708
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.708 0.708
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.708 0.708
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.708 0.708
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.708 0.708
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.708 0.708
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.708 0.708
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.708 0.708
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.708 0.708
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708 0.708
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.708 0.708
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.708 0.708
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.708 0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708 0.708
MADS15
M10972_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_01
0.708 0.708
MADS18
M10973_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.708 0.708
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.708 0.708
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.708 0.708
Q9ST54_MALDO
M11029_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.708 0.708
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.708 0.708
O82697_MALDO
M11020_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.708 0.708
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.708 0.708
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.708 0.708
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.708 0.708
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s06060.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

1432 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29661.m000902 Ricinus communis 29661.m000902 N 0.000
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.000
BGIOSGA010258 Oryza indica BGIOSGA010258 N 0.000
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.000
BGIOSGA026049 Oryza indica BGIOSGA026049 N 0.000
Bo1g003550 Brassica oleracea Bo1g003550 N 0.000
Bo2g168020 Brassica oleracea Bo2g168020 N 0.000
Bo5g132850 Brassica oleracea Bo5g132850 N 0.000
Bo7g063630 Brassica oleracea Bo7g063630 N 0.000
Bo7g099150 Brassica oleracea Bo7g099150 N 0.000
Bo8g079200 Brassica oleracea Bo8g079200 N 0.000
Bo9g019150 Brassica oleracea Bo9g019150 N 0.000
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.000
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.000
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N 0.000
Bra011772 Brassica rapa Bra011772 N 0.000
Bra012164 Brassica rapa Bra012164 N 0.000
Bra012913 Brassica rapa Bra012913 N 0.000
Bra031833 Brassica rapa Bra031833 N 0.000
Bra036040 Brassica rapa Bra036040 N 0.000
Bra037847 Brassica rapa Bra037847 N 0.000
BRADI1G14780 Brachypodium distachyon BRADI1G14780 N 0.000
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N 0.000
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.000
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.000
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.000
Carubv10027507m.g Capsella rubella Carubv10027507m.g N 0.000
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.000
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.000
cassava9459.m1 Manihot esculenta cassava9459.m1 N 0.000
Ca_09342 Cicer arietinum Ca_09342 N 0.000
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.000
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N 0.000
Cla014228 Citrullus lanatus Cla014228 N 0.000
Cucsa.103050 Cucumis sativus Cucsa.103050 N 0.000
Cucsa.352730 Cucumis sativus Cucsa.352730 N 0.000
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.000
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.000
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.000
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.000
GLYMA05G22120 Glycine max GLYMA05G22120 N 0.000
GLYMA17G17540 Glycine max GLYMA17G17540 N 0.000
GRMZM2G017319 Zea mays GRMZM2G017319 N 0.000
GRMZM2G044902 Zea mays GRMZM2G044902 N 0.000
GRMZM2G177110 Zea mays GRMZM2G177110 N 0.000
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N 0.000
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.000
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.000
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.000
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N 0.000
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N 0.000
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.000
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.000
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.000
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.000
LBD37 Arabidopsis thaliana AT5G67420 N 0.000
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.000
LBD38 Arabidopsis thaliana AT3G49940 N 0.000
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.000
LPERR03G21440 Leersia perrieri LPERR03G21440 N 0.000
MDP0000151330 Malus domestica MDP0000151330 N 0.000
MDP0000239820 Malus domestica MDP0000239820 N 0.000
MLOC_51325 Hordeum vulgare MLOC_51325 N 0.000
MTR_5g015880 Medicago truncatula MTR_5g015880 N 0.000
OB03G31560 Oryza brachyantha OB03G31560 N 0.000
OB03G33950 Oryza brachyantha OB03G33950 N 0.000
OBART03G22820 Oryza barthii OBART03G22820 N 0.000
OBART03G25820 Oryza barthii OBART03G25820 N 0.000
OBART07G20600 Oryza barthii OBART07G20600 N 0.000
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.000
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N 0.000
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N 0.000
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.000
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.000
OMERI07G17270 Oryza meridionalis OMERI07G17270 N 0.000
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.000
ONIVA07G19050 Oryza nivara ONIVA07G19050 N 0.000
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.000
OPUNC03G23160 Oryza punctata OPUNC03G23160 N 0.000
OPUNC07G19440 Oryza punctata OPUNC07G19440 N 0.000
OPUNC07G19460 Oryza punctata OPUNC07G19460 N 0.000
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.000
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.000
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N 0.000
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N 0.000
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.000
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N 0.000
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N 0.000
OS03G0445700 Oryza sativa OS03G0445700 N 0.000
OS03G0609500 Oryza sativa OS03G0609500 N 0.000
OS07G0589000 Oryza sativa OS07G0589000 N 0.000
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N 0.000
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.000
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N 0.000
Pavir.J16587 Panicum virgatum Pavir.J16587 N 0.000
Pavir.J18418 Panicum virgatum Pavir.J18418 N 0.000
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.000
PK03075.1 Cannabis sativa PK03075.1 N 0.000
PK15647.1 Cannabis sativa PK15647.1 N 0.000
PK25954.1 Cannabis sativa PK25954.1 N 0.000
PK29811.1 Cannabis sativa PK29811.1 N 0.000
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N 0.000
Sb01g031790 Sorghum bicolor Sb01g031790 N 0.000
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.000
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.000
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.000
Si031011m.g Setaria italica Si031011m.g N 0.000
Si037275m.g Setaria italica Si037275m.g N 0.000
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.000
TCM_000766 Theobroma cacao TCM_000766 N 0.000
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.000
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.000
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.000
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N 0.000
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N 0.000
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N 0.000
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.000
Traes_4BS_3BCDF0612 Triticum aestivum Traes_4BS_3BCDF0612 N 0.000
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N 0.000
Traes_4DS_9575221BB Triticum aestivum Traes_4DS_9575221BB N 0.000
TRIUR3_28321 Triticum urartu TRIUR3_28321 N 0.000
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.000