POPTR_0017s06800 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0017s06800 T255877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s06800.1 MADS box 21 68

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.729
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.729
SapurV1A.0150s0040 Salix purpurea SapurV1A.0150s0040 N 0.938
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 1.000
POPTR_0017s06810 Populus trichocarpa POPTR_0017s06810 N 0.979
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GRMZM2G035092 Zea mays GRMZM2G035092 N 0.702
GRMZM2G110582 Zea mays GRMZM2G110582 N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
Cla010744 Citrullus lanatus Cla010744 N 0.708
Pm021018 Prunus mume Pm021018 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
27866.m000233 Ricinus communis 27866.m000233 N 0.896
30099.m001672 Ricinus communis 30099.m001672 N 0.750
cassava27416.m1 Manihot esculenta cassava27416.m1 N 0.875
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.708
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.708
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.723
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.708
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.708
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.708
mgf024454m Mimulus guttatus mgf024454m N 0.708