POPTR_0017s07170 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0017s07170 T255879_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s07170.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.917
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.896
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.896
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.875
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.875
TCM_007378 Theobroma cacao TCM_007378 I 0.875
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.875
Pm022002 Prunus mume Pm022002 I 0.854
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.854
29838.m001690 Ricinus communis 29838.m001690 I 0.854
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.854
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.854
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.833
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.833
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.833
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.833
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.833
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.833
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.833
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.833
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.812
Cla022499 Citrullus lanatus Cla022499 I 0.812
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.812
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.812
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.812
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.812
MTR_4g093970 Medicago truncatula MTR_4g093970 I 0.812
TCM_034501 Theobroma cacao TCM_034501 I 0.812
mgf015964m Mimulus guttatus mgf015964m I 0.812
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.812
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.812
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.812
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.812
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.792
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.792
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.792
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.792
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.792
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.792
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.792
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.792
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.792
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.792
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.792
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.792
Cla014322 Citrullus lanatus Cla014322 I 0.792
MDP0000209705 Malus domestica MDP0000209705 I 0.792
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.792
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.792
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.792
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.792
Pm002166 Prunus mume Pm002166 I 0.792
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.771
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.771
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.771
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.771
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.771
Bra030228 Brassica rapa Bra030228 I 0.771
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.771
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.771
TCM_000992 Theobroma cacao TCM_000992 I 0.771
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.771
Cla013108 Citrullus lanatus Cla013108 N 0.771
MDP0000233948 Malus domestica MDP0000233948 I 0.771
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.771
Bo4g149800 Brassica oleracea Bo4g149800 I 0.771
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.771
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.771
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.771
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.771
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.771
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.771
OBART03G06320 Oryza barthii OBART03G06320 I 0.771
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.771
PK11571.1 Cannabis sativa PK11571.1 I 0.771
PK28167.1 Cannabis sativa PK28167.1 I 0.771
OB11G21480 Oryza brachyantha OB11G21480 I 0.771
OS03G0186600 Oryza sativa OS03G0186600 I 0.771
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.771
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.771
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.771
Si037358m.g Setaria italica Si037358m.g I 0.771
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.771
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.766
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.766
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.750
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.750
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.750
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.750
mgf025830m Mimulus guttatus mgf025830m I 0.750
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.750
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.750
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.750
AGL24 Arabidopsis thaliana AT4G24540 I 0.750
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.750
mgf023192m Mimulus guttatus mgf023192m I 0.750
Bo7g109590 Brassica oleracea Bo7g109590 I 0.750
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.750
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.750
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.750
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.750
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.750
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.750
F775_26069 Aegilops tauschii F775_26069 I 0.750
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.750
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.750
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.750
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.750
Ca_21060 Cicer arietinum Ca_21060 I 0.750
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.750
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.750
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.750
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.750
SVP Vitis vinifera VIT_00s0313g00070 I 0.750
Bo1g039080 Brassica oleracea Bo1g039080 I 0.750
Bra038511 Brassica rapa Bra038511 I 0.750
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.750
Bra013812 Brassica rapa Bra013812 I 0.750
Bra019221 Brassica rapa Bra019221 I 0.750
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.750
SVP Arabidopsis thaliana AT2G22540 D 0.750
Bo8g101000 Brassica oleracea Bo8g101000 I 0.750
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.745
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.745
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
Ca_01491 Cicer arietinum Ca_01491 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
Ca_12416 Cicer arietinum Ca_12416 I 0.729
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.729
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.729
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.729
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.708
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.708
TT16 Arabidopsis lyrata fgenesh2_kg.6__2319__AT5G23260.2 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.708
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
Pm004416 Prunus mume Pm004416 I 0.708
TT16 Arabidopsis thaliana AT5G23260 I 0.708
Pm004420 Prunus mume Pm004420 I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.702
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.702
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.700