Sb02g005005 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb02g005005 T256039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.718 0.718
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.718 0.718
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.718 0.718
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.718 0.718
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.718 0.718
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.718 0.718
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.718 0.718
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.718 0.718
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb02g005005.1 MADS box 85 123

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_136_00010 Aquilegia coerulea Aquca_136_00010 I 0.718
Aquca_136_00009 Aquilegia coerulea Aquca_136_00009 I 0.718
Eucgr.E02863 Eucalyptus grandis Eucgr.E02863 I 0.718
orange1.1g036452m.g Citrus sinensis orange1.1g036452m.g I 0.718
SapurV1A.2206s0010 Salix purpurea SapurV1A.2206s0010 I 0.718
SapurV1A.0383s0080 Salix purpurea SapurV1A.0383s0080 I 0.718
STK Vitis vinifera VIT_18s0041g01880 I 0.718
Solyc07g055920.2 Solanum lycopersicum Solyc07g055920.2 I 0.718
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.718
GLYMA04G43640 Glycine max GLYMA04G43640 I 0.718
PGSC0003DMG400017295 Solanum tuberosum PGSC0003DMG400017295 I 0.718
POPTR_0013s09960 Populus trichocarpa POPTR_0013s09960 I 0.718
Sb05g023351 Sorghum bicolor Sb05g023351 I 0.718
AMTR_s00071p00193200 Amborella trichopoda AMTR_s00071p00193200 I 0.718