Sb06g028420 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb06g028420 T256079_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.750 0.750
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb06g028420.1 MADS box 10 57

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G135018 Zea mays GRMZM2G135018 I 1.000
Pavir.Ga00461 Panicum virgatum Pavir.Ga00461 I 1.000
GRMZM2G005155 Zea mays GRMZM2G005155 I 1.000
Pavir.Gb00526 Panicum virgatum Pavir.Gb00526 I 0.979
GRMZM2G128953 Zea mays GRMZM2G128953 I 0.979
AC233912.1_FG001 Zea mays AC233912.1_FG001 I 0.979
GRMZM2G446426 Zea mays GRMZM2G446426 N 0.938
GRMZM2G137387 Zea mays GRMZM2G137387 I 0.938
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.938
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.917
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.917
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.917
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.917
GRMZM2G148220 Zea mays GRMZM2G148220 N 0.917
OB04G32080 Oryza brachyantha OB04G32080 I 0.917
MADS31 Oryza sativa OS04G0614100 I 0.917
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.917
OBART04G25610 Oryza barthii OBART04G25610 I 0.917
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.917
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.896
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.896
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.875
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.875
F775_05654 Aegilops tauschii F775_05654 I 0.875
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.875
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.875
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.854
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.812
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.771
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.771
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.771
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.771
F775_30836 Aegilops tauschii F775_30836 I 0.771
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.771
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.771
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.771
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.750
OBART02G05380 Oryza barthii OBART02G05380 I 0.750
OBART06G14060 Oryza barthii OBART06G14060 I 0.750
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.750
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.750
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.750
Si018183m.g Setaria italica Si018183m.g I 0.750
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.750
OS06G0347700 Oryza sativa OS06G0347700 I 0.750
TT16 Vitis vinifera VIT_01s0011g01560 I 0.750
Carubv10026982m.g Capsella rubella Carubv10026982m.g I 0.750
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.750
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.750
MADS29 Oryza sativa OS02G0170300 I 0.750
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.750
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.750
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.750
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.750
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.750
OB02G14670 Oryza brachyantha OB02G14670 I 0.750
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.750
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.750
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.750
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.750
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.750
F775_15097 Aegilops tauschii F775_15097 I 0.750
M17_MAIZE Zea mays M17_MAIZE D 0.750
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.750
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.750
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.750
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.737
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I 0.729
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.729
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.729
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.729
Carubv10027093m.g Capsella rubella Carubv10027093m.g I 0.729
Bo1g007520 Brassica oleracea Bo1g007520 I 0.729
Bra011509 Brassica rapa Bra011509 I 0.729
AGL71 Arabidopsis thaliana AT5G51870 I 0.729
Traes_7BL_F5B6736D0 Triticum aestivum Traes_7BL_F5B6736D0 I 0.729
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.729
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.729
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.729
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I 0.729
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.729
GRMZM2G130382 Zea mays GRMZM2G130382 I 0.729
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I 0.729
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.729
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.729
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.729
OB06G22200 Oryza brachyantha OB06G22200 I 0.729
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.729
OB11G21480 Oryza brachyantha OB11G21480 I 0.714
Traes_5DS_82FA431DB Triticum aestivum Traes_5DS_82FA431DB I 0.708
Ca_19854 Cicer arietinum Ca_19854 I 0.708
Cla023427 Citrullus lanatus Cla023427 I 0.708
Pm019404 Prunus mume Pm019404 I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.708
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.708
Traes_4AL_72A03AD23 Triticum aestivum Traes_4AL_72A03AD23 I 0.708
TRIUR3_09266 Triticum urartu TRIUR3_09266 I 0.708
LjSGA_019451.1 Lotus japonicus LjSGA_019451.1 I 0.708
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.708
BGIOSGA008494 Oryza indica BGIOSGA008494 I 0.708
AGL42 Arabidopsis thaliana AT5G62165 D 0.708
PK01421.1 Cannabis sativa PK01421.1 I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.708
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.708
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.708
AGL16 Arabidopsis thaliana AT3G57230 D 0.708
MDP0000268317 Malus domestica MDP0000268317 I 0.708
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.708
AGL72 Arabidopsis thaliana AT5G51860 I 0.708
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.708
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.708
Thhalv10004954m.g Eutrema salsugineum Thhalv10004954m.g I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.708
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.708
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.708
Thhalv10014716m.g Eutrema salsugineum Thhalv10014716m.g I 0.708
Si003917m.g Setaria italica Si003917m.g I 0.708
ONIVA04G13150 Oryza nivara ONIVA04G13150 I 0.708
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.708
ONIVA02G24100 Oryza nivara ONIVA02G24100 I 0.708
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.708
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.708
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.708
OPUNC02G19600 Oryza punctata OPUNC02G19600 I 0.708
Bra029155 Brassica rapa Bra029155 I 0.708
BRADI3G46920 Brachypodium distachyon BRADI3G46920 I 0.708
ORGLA04G0120000 Oryza glaberrima ORGLA04G0120000 I 0.708
F775_18161 Aegilops tauschii F775_18161 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
OMERI02G21410 Oryza meridionalis OMERI02G21410 I 0.708
OBART02G21870 Oryza barthii OBART02G21870 I 0.708
OBART04G15020 Oryza barthii OBART04G15020 I 0.708
MTR_5g031000 Medicago truncatula MTR_5g031000 I 0.708
OB01G48510 Oryza brachyantha OB01G48510 I 0.708
OB04G22330 Oryza brachyantha OB04G22330 I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
LPERR02G17700 Leersia perrieri LPERR02G17700 I 0.708
OLONG_024179 Oryza longistaminata OLONG_024179 I 0.708
GRMZM2G316366 Zea mays GRMZM2G316366 I 0.708
OLONG_016283 Oryza longistaminata OLONG_016283 I 0.708
OGLUM02G22050 Oryza glumaepatula OGLUM02G22050 I 0.708
Traes_1DS_A0312C264 Triticum aestivum Traes_1DS_A0312C264 I 0.708
Bra029154 Brassica rapa Bra029154 I 0.708
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
ORUFI02G22950 Oryza rufipogon ORUFI02G22950 I 0.708
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.708
OB02G29310 Oryza brachyantha OB02G29310 I 0.708
Solyc01g106170.2 Solanum lycopersicum Solyc01g106170.2 I 0.708
Si019337m.g Setaria italica Si019337m.g I 0.708
Bo3g023570 Brassica oleracea Bo3g023570 I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
Sb04g024010 Sorghum bicolor Sb04g024010 I 0.708
scaffold_801621.1 Arabidopsis lyrata scaffold_801621.1 I 0.708
Bra017638 Brassica rapa Bra017638 I 0.708
Bo7g116760 Brassica oleracea Bo7g116760 I 0.708
Bra028282 Brassica rapa Bra028282 I 0.708
Bra028283 Brassica rapa Bra028283 I 0.708
ORUFI04G16410 Oryza rufipogon ORUFI04G16410 I 0.708
OS04G0461300 Oryza sativa OS04G0461300 I 0.708
MADS27 Oryza sativa OS02G0579600 I 0.708
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.708
Q9FVN1_MAIZE Zea mays Q9FVN1_MAIZE D 0.708
Bo9g103660 Brassica oleracea Bo9g103660 I 0.708
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.708
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.702
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.702
OB04G21020 Oryza brachyantha OB04G21020 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700