Si012517m.g (Setaria italica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Si012517m.g T256214_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9FVN1_MAIZE
M10982_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.979 0.979
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.833 0.833
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.833 0.833
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.771 0.771
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.771 0.771
MADS2
M10966_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.771 0.771
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN

NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.750 0.750
AGL1
M10920_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.750 0.750
AGL1
M10921_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.750 0.750
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.750 0.750
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.750 0.750
Q9AR49_MAIZE
M10980_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.750 0.750
SHP2
M10914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.750 0.750
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.729 0.729
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.729 0.729
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.729 0.729
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.729 0.729
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.729 0.729
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.729 0.729
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.729 0.729
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.729 0.729
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.729 0.729
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.729 0.729
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.729 0.729
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.729 0.729
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.729 0.729
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.729 0.729
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.729 0.729
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708 0.708
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.708 0.708
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.708 0.708
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.708 0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708 0.708
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.708 0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708 0.708
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708 0.708
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si012517m MADS box 10 57

Links

Other MADS box family TFs
Other Setaria italica TFs

1019 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK07026.1 Cannabis sativa PK07026.1 N 0.000
Aquca_005_00404 Aquilegia coerulea Aquca_005_00404 N 0.000
mgf007614m Mimulus guttatus mgf007614m N 0.000
Cucsa.053270 Cucumis sativus Cucsa.053270 N 0.000
cassava24578.valid.m1 Manihot esculenta cassava24578.valid.m1 N 0.000
Pm029452 Prunus mume Pm029452 N 0.000
Ca_06943 Cicer arietinum Ca_06943 N 0.000
VIT_19s0014g04940 Vitis vinifera VIT_19s0014g04940 N 0.000
TRIUR3_35245 Triticum urartu TRIUR3_35245 N 0.000
Traes_2DS_2D035BAFD Triticum aestivum Traes_2DS_2D035BAFD N 0.000
Traes_2BS_4600D4B54 Triticum aestivum Traes_2BS_4600D4B54 N 0.000
Traes_2AS_620B821281 Triticum aestivum Traes_2AS_620B821281 N 0.000
TCM_031132 Theobroma cacao TCM_031132 N 0.000
Ciclev10007843m.g Citrus clementina Ciclev10007843m.g N 0.000
Eucgr.F03414 Eucalyptus grandis Eucgr.F03414 N 0.000
gene03285-v1.0-hybrid Fragaria vesca gene03285-v1.0-hybrid N 0.000
SapurV1A.3085s0020 Salix purpurea SapurV1A.3085s0020 N 0.000
SapurV1A.0664s0120 Salix purpurea SapurV1A.0664s0120 N 0.000
SapurV1A.0327s0070 Salix purpurea SapurV1A.0327s0070 N 0.000
Pavir.J35699 Panicum virgatum Pavir.J35699 N 0.000
Pavir.Bb02923 Panicum virgatum Pavir.Bb02923 N 0.000
orange1.1g040563m.g Citrus sinensis orange1.1g040563m.g N 0.000
MDP0000205622 Malus domestica MDP0000205622 N 0.000
Lus10036623.g Linum usitatissimum Lus10036623.g N 0.000
Lus10035840.g Linum usitatissimum Lus10035840.g N 0.000
Gorai.013G164700 Gossypium raimondii Gorai.013G164700 N 0.000
Gorai.009G427800 Gossypium raimondii Gorai.009G427800 N 0.000
Gorai.002G080600 Gossypium raimondii Gorai.002G080600 N 0.000
Solyc12g005340.1 Solanum lycopersicum Solyc12g005340.1 N 0.000
Solyc07g063940.1 Solanum lycopersicum Solyc07g063940.1 N 0.000
Si029156m.g Setaria italica Si029156m.g N 0.000
OB07G23640 Oryza brachyantha OB07G23640 N 0.000
MTR_2g082090 Medicago truncatula MTR_2g082090 N 0.000
MLOC_37712 Hordeum vulgare MLOC_37712 N 0.000
GSMUA_Achr6G24310_001 Musa acuminata GSMUA_Achr6G24310_001 N 0.000
GRMZM5G821439 Zea mays GRMZM5G821439 N 0.000
GLYMA13G36120 Glycine max GLYMA13G36120 N 0.000
GLYMA12G34420 Glycine max GLYMA12G34420 N 0.000
GLYMA12G16750 Glycine max GLYMA12G16750 N 0.000
GLYMA06G41500 Glycine max GLYMA06G41500 N 0.000
F775_07373 Aegilops tauschii F775_07373 N 0.000
BRADI1G25370 Brachypodium distachyon BRADI1G25370 N 0.000
BGIOSGA025902 Oryza indica BGIOSGA025902 N 0.000
OBART07G17780 Oryza barthii OBART07G17780 N 0.000
OGLUM07G17420 Oryza glumaepatula OGLUM07G17420 N 0.000
OLONG_024541 Oryza longistaminata OLONG_024541 N 0.000
Sb02g035680 Sorghum bicolor Sb02g035680 N 0.000
PRUPE_ppa003323mg Prunus persica PRUPE_ppa003323mg N 0.000
POPTR_0011s13460 Populus trichocarpa POPTR_0011s13460 N 0.000
POPTR_0001s44090 Populus trichocarpa POPTR_0001s44090 N 0.000
PGSC0003DMG400021802 Solanum tuberosum PGSC0003DMG400021802 N 0.000
PGSC0003DMG400019232 Solanum tuberosum PGSC0003DMG400019232 N 0.000
CIGR1 Oryza sativa OS07G0545800 N 0.000
ORUFI07G18480 Oryza rufipogon ORUFI07G18480 N 0.000
ORGLA07G0142600 Oryza glaberrima ORGLA07G0142600 N 0.000
OPUNC07G16570 Oryza punctata OPUNC07G16570 N 0.000
ONIVA07G16090 Oryza nivara ONIVA07G16090 N 0.000
OMERI07G14660 Oryza meridionalis OMERI07G14660 N 0.000
AMTR_s00043p00136400 Amborella trichopoda AMTR_s00043p00136400 N 0.000