Solyc03g115910.1 (Solanum lycopersicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Solyc03g115910.1 T256329_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g115910.1.1 MADS box 54 101

Links

Other MADS box family TFs
Other Solanum lycopersicum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.729
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.717
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.812
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.812
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.729
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.750
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.771
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.708
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.771
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.750
MDP0000193129 Malus domestica MDP0000193129 I 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.771
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.750
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.771
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.729
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.729
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.729
mgf004425m Mimulus guttatus mgf004425m I 0.833
Bo8g068060 Brassica oleracea Bo8g068060 I 0.750
Bo8g104060 Brassica oleracea Bo8g104060 I 0.750
Bra016544 Brassica rapa Bra016544 I 0.750
Bra025685 Brassica rapa Bra025685 I 0.750
Bra031049 Brassica rapa Bra031049 I 0.750
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.729
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.739
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.708
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.812
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.792
30138.m004061 Ricinus communis 30138.m004061 I 0.792
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.812
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.771
mgf000945m Mimulus guttatus mgf000945m I 0.833
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.766
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.917