Solyc06g059970.2 (Solanum lycopersicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Solyc06g059970.2 T256355_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.896 0.896
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.875 0.875
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.833 0.833
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.729 0.729
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.729 0.729
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.729 0.729
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g059970.2.1 MADS box 10 57

Links

Other MADS box family TFs
Other Solanum lycopersicum TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29648.m001978 Ricinus communis 29648.m001978 I 0.917
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.917
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.917
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.917
Pm004718 Prunus mume Pm004718 I 0.896
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.896
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.896
Cla023547 Citrullus lanatus Cla023547 I 0.896
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.896
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.896
TCM_035212 Theobroma cacao TCM_035212 I 0.896
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.875
PI Vitis vinifera VIT_18s0001g01760 I 0.875
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.875
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.875
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.875
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.875
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.875
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.854
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.854
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.854
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.854
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.854
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.854
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.854
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.854
Ca_13111 Cicer arietinum Ca_13111 I 0.854
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.833
mgf008207m Mimulus guttatus mgf008207m I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.833
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.833
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.833
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.812
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.812
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.812
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.812
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.792
Bo3g010390 Brassica oleracea Bo3g010390 I 0.792
Ca_03887 Cicer arietinum Ca_03887 I 0.792
TCM_000266 Theobroma cacao TCM_000266 I 0.792
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.792
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.792
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.792
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.792
PI Arabidopsis thaliana AT5G20240 D 0.792
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.792
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
Bra002285 Brassica rapa Bra002285 I 0.771
Bra020093 Brassica rapa Bra020093 I 0.771
Bra006549 Brassica rapa Bra006549 I 0.771
Bo3g014100 Brassica oleracea Bo3g014100 I 0.771
Bo9g152080 Brassica oleracea Bo9g152080 I 0.771
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.771
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.771
Bo2g020730 Brassica oleracea Bo2g020730 I 0.771
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.771
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.771
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.771
Ca_04909 Cicer arietinum Ca_04909 I 0.771
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.771
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.771
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.750
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.750
Pm006266 Prunus mume Pm006266 I 0.750
Cla021117 Citrullus lanatus Cla021117 I 0.750
AP3 Vitis vinifera VIT_18s0001g13460 I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.750
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.729
MDP0000133037 Malus domestica MDP0000133037 I 0.729
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.729
AP3 Arabidopsis thaliana AT3G54340 D 0.729
MDP0000224779 Malus domestica MDP0000224779 I 0.729
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.729
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.729
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.729
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.729
MDP0000315938 Malus domestica MDP0000315938 I 0.729
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.729
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.729
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.729
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.729
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.729
MDP0000184294 Malus domestica MDP0000184294 I 0.729
Pm026712 Prunus mume Pm026712 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.729
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.729
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.729
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
29782.m000119 Ricinus communis 29782.m000119 I 0.729
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.708
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.708
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
Bra014822 Brassica rapa Bra014822 I 0.708
Bra007067 Brassica rapa Bra007067 I 0.708
Bo4g120010 Brassica oleracea Bo4g120010 I 0.708
Bo8g083600 Brassica oleracea Bo8g083600 I 0.708
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.708
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.708
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.708
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.708
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.708
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.708
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.708
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.708
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.708