CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_4DS_A28BC582A
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_4DS_A28BC582A
T256568_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.792
0.792
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.708
0.708
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.708
0.708
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.708
0.708
AGL3
M10910_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.708
0.708
Q40882_PETHY
M11003_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP11_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_4DS_A28BC582A.1
MADS box
10
57
RIENNTNRHVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSRRLCPF
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
192 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TRIUR3_20588
Triticum urartu
TRIUR3_20588
I
1.000
F775_03584
Aegilops tauschii
F775_03584
I
1.000
BRADI3G39177
Brachypodium distachyon
BRADI3G39177
I
0.979
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.896
Bra015643
Brassica rapa
Bra015643
I
0.896
POPTR_0002s09290
Populus trichocarpa
POPTR_0002s09290
I
0.896
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.896
GSMUA_Achr3G04450_001
Musa acuminata
GSMUA_Achr3G04450_001
I
0.896
GRMZM2G152415
Zea mays
GRMZM2G152415
I
0.896
Si008439m.g
Setaria italica
Si008439m.g
I
0.896
Sb10g007810
Sorghum bicolor
Sb10g007810
I
0.896
OB08G26170
Oryza brachyantha
OB08G26170
I
0.896
GRMZM2G334225
Zea mays
GRMZM2G334225
I
0.896
ORUFI06G08110
Oryza rufipogon
ORUFI06G08110
I
0.896
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.896
ONIVA08G21050
Oryza nivara
ONIVA08G21050
I
0.896
SapurV1A.0010s0340
Salix purpurea
SapurV1A.0010s0340
I
0.896
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.896
OGLUM08G20110
Oryza glumaepatula
OGLUM08G20110
I
0.875
OGLUM06G08350
Oryza glumaepatula
OGLUM06G08350
I
0.875
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.875
GSMUA_Achr9G13010_001
Musa acuminata
GSMUA_Achr9G13010_001
I
0.875
OMERI06G09450
Oryza meridionalis
OMERI06G09450
I
0.875
TCM_001182
Theobroma cacao
TCM_001182
I
0.875
ORGLA06G0074200
Oryza glaberrima
ORGLA06G0074200
I
0.875
ORUFI08G21330
Oryza rufipogon
ORUFI08G21330
I
0.875
TCM_034970
Theobroma cacao
TCM_034970
I
0.875
OB06G17440
Oryza brachyantha
OB06G17440
I
0.875
OS06G0223300
Oryza sativa
OS06G0223300
I
0.875
OS08G0494100
Oryza sativa
OS08G0494100
I
0.875
LPERR08G16000
Leersia perrieri
LPERR08G16000
I
0.875
OBART08G19110
Oryza barthii
OBART08G19110
I
0.875
OBART06G07860
Oryza barthii
OBART06G07860
I
0.875
ORGLA08G0167200
Oryza glaberrima
ORGLA08G0167200
I
0.875
VIT_07s0031g01140
Vitis vinifera
VIT_07s0031g01140
I
0.875
Ciclev10003964m.g
Citrus clementina
Ciclev10003964m.g
I
0.875
gene31290-v1.0-hybrid
Fragaria vesca
gene31290-v1.0-hybrid
I
0.875
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.875
Carubv10010907m.g
Capsella rubella
Carubv10010907m.g
I
0.875
ONIVA06G09080
Oryza nivara
ONIVA06G09080
I
0.875
MDP0000243965
Malus domestica
MDP0000243965
I
0.875
orange1.1g039560m.g
Citrus sinensis
orange1.1g039560m.g
I
0.875
AGL66
Arabidopsis thaliana
AT1G77980
I
0.875
Pavir.J32837
Panicum virgatum
Pavir.J32837
I
0.875
BGIOSGA003731
Oryza indica
BGIOSGA003731
I
0.875
Pavir.Db01574
Panicum virgatum
Pavir.Db01574
I
0.875
BGIOSGA026745
Oryza indica
BGIOSGA026745
I
0.875
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.875
Cagra.1707s0007
Capsella grandiflora
Cagra.1707s0007
I
0.875
Cla014721
Citrullus lanatus
Cla014721
I
0.875
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.875
Ca_24539
Cicer arietinum
Ca_24539
I
0.875
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.875
Aquca_014_00554
Aquilegia coerulea
Aquca_014_00554
I
0.875
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.854
OPUNC08G17110
Oryza punctata
OPUNC08G17110
I
0.854
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.854
SapurV1A.0293s0130
Salix purpurea
SapurV1A.0293s0130
I
0.854
29908.m005982
Ricinus communis
29908.m005982
I
0.854
POPTR_0007s05980
Populus trichocarpa
POPTR_0007s05980
I
0.854
cassava32041.m1
Manihot esculenta
cassava32041.m1
I
0.854
cassava22012.m1
Manihot esculenta
cassava22012.m1
I
0.854
Gorai.005G093000
Gossypium raimondii
Gorai.005G093000
I
0.854
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.854
Pm019181
Prunus mume
Pm019181
I
0.854
Si013985m.g
Setaria italica
Si013985m.g
I
0.854
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.854
Bra012308
Brassica rapa
Bra012308
I
0.854
Bra016386
Brassica rapa
Bra016386
I
0.854
AGL104
Arabidopsis thaliana
AT1G22130
I
0.854
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.854
Aquca_032_00047
Aquilegia coerulea
Aquca_032_00047
I
0.833
AMTR_s00010p00214260
Amborella trichopoda
AMTR_s00010p00214260
I
0.833
Gorai.005G100600
Gossypium raimondii
Gorai.005G100600
I
0.833
GLYMA14G34160
Glycine max
GLYMA14G34160
I
0.833
OMERI08G15140
Oryza meridionalis
OMERI08G15140
I
0.833
30170.m013776
Ricinus communis
30170.m013776
I
0.833
cassava25616.m1
Manihot esculenta
cassava25616.m1
I
0.833
Gorai.009G216900
Gossypium raimondii
Gorai.009G216900
I
0.833
Bostr.12659s0064
Boechera stricta
Bostr.12659s0064
I
0.833
Lus10018714.g
Linum usitatissimum
Lus10018714.g
I
0.833
Lus10022506.g
Linum usitatissimum
Lus10022506.g
I
0.833
Lus10016810.g
Linum usitatissimum
Lus10016810.g
I
0.833
PK24279.1
Cannabis sativa
PK24279.1
I
0.824
fgenesh2_kg.2__2429__AT1G77950.2
Arabidopsis lyrata
fgenesh2_kg.2__2429__AT1G77950.2
I
0.812
GLYMA13G02170
Glycine max
GLYMA13G02170
I
0.812
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.812
mgf017317m
Mimulus guttatus
mgf017317m
I
0.812
Thhalv10019795m.g
Eutrema salsugineum
Thhalv10019795m.g
I
0.812
fgenesh2_kg.2__2089__AT1G77950.1
Arabidopsis lyrata
fgenesh2_kg.2__2089__AT1G77950.1
I
0.812
Gorai.007G242000
Gossypium raimondii
Gorai.007G242000
I
0.812
evm.TU.supercontig_21.133
Carica papaya
evm.TU.supercontig_21.133
I
0.812
estExt_fgenesh1_pm.C_80015
Physcomitrella patens
estExt_fgenesh1_pm.C_80015
I
0.792
MDP0000152821
Malus domestica
MDP0000152821
I
0.792
GLYMA04G04641
Glycine max
GLYMA04G04641
I
0.792
Ca_01572
Cicer arietinum
Ca_01572
I
0.792
AGL67
Arabidopsis thaliana
AT1G77950
D
0.792
VIT_18s0001g09540
Vitis vinifera
VIT_18s0001g09540
I
0.792
orange1.1g046530m.g
Citrus sinensis
orange1.1g046530m.g
I
0.792
TCM_034757
Theobroma cacao
TCM_034757
I
0.792
estExt_fgenesh1_kg.C_550007
Physcomitrella patens
estExt_fgenesh1_kg.C_550007
I
0.792
Solyc04g078300.2
Solanum lycopersicum
Solyc04g078300.2
I
0.792
Ciclev10001730m.g
Citrus clementina
Ciclev10001730m.g
I
0.792
PRUPE_ppa020874mg
Prunus persica
PRUPE_ppa020874mg
I
0.792
Pm005355
Prunus mume
Pm005355
I
0.792
Lus10024823.g
Linum usitatissimum
Lus10024823.g
I
0.792
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.788
PRUPE_ppa023054mg
Prunus persica
PRUPE_ppa023054mg
I
0.771
MTR_3g102570
Medicago truncatula
MTR_3g102570
I
0.771
Carubv10021761m.g
Capsella rubella
Carubv10021761m.g
I
0.771
e_gw1.55.5.1
Physcomitrella patens
e_gw1.55.5.1
I
0.771
Cagra.0096s0039
Capsella grandiflora
Cagra.0096s0039
I
0.771
estExt_gwp_gw1.C_900087
Physcomitrella patens
estExt_gwp_gw1.C_900087
I
0.771
estExt_fgenesh1_pg.C_1180093
Physcomitrella patens
estExt_fgenesh1_pg.C_1180093
I
0.771
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
fgenesh1_pg.scaffold_163000049
Physcomitrella patens
fgenesh1_pg.scaffold_163000049
I
0.750
estExt_gwp_gw1.C_1630046
Physcomitrella patens
estExt_gwp_gw1.C_1630046
I
0.750
estExt_Genewise1.C_80073
Physcomitrella patens
estExt_Genewise1.C_80073
I
0.750
e_gw1.273.6.1
Physcomitrella patens
e_gw1.273.6.1
I
0.750
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.743
Gorai.009G358500
Gossypium raimondii
Gorai.009G358500
I
0.737
SELMODRAFT_449721
Selaginella moellendorffii
SELMODRAFT_449721
N
0.729
mgf019100m
Mimulus guttatus
mgf019100m
N
0.729
SELMODRAFT_449720
Selaginella moellendorffii
SELMODRAFT_449720
N
0.729
mgf006616m
Mimulus guttatus
mgf006616m
I
0.729
Solyc11g028020.1
Solanum lycopersicum
Solyc11g028020.1
I
0.729
ORUFI08G24040
Oryza rufipogon
ORUFI08G24040
I
0.729
Bo6g121610
Brassica oleracea
Bo6g121610
I
0.729
PGSC0003DMG401015205
Solanum tuberosum
PGSC0003DMG401015205
I
0.729
PGSC0003DMG400025525
Solanum tuberosum
PGSC0003DMG400025525
I
0.729
Q40172_SOLLC
Solanum lycopersicum
Q40172_SOLLC
I
0.729
estExt_gwp_gw1.C_340302
Physcomitrella patens
estExt_gwp_gw1.C_340302
I
0.729
Solyc03g019710.2
Solanum lycopersicum
Solyc03g019710.2
I
0.729
OPUNC08G19670
Oryza punctata
OPUNC08G19670
I
0.729
Cucsa.392160
Cucumis sativus
Cucsa.392160
I
0.729
Cla002664
Citrullus lanatus
Cla002664
I
0.729
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
Thhalv10004767m.g
Eutrema salsugineum
Thhalv10004767m.g
I
0.708
ORUFI10G17990
Oryza rufipogon
ORUFI10G17990
I
0.708
SapurV1A.4216s0020
Salix purpurea
SapurV1A.4216s0020
I
0.708
Lus10002763.g
Linum usitatissimum
Lus10002763.g
I
0.708
SEP4
Arabidopsis lyrata
Al_scaffold_0005_309
I
0.708
Gorai.001G172200
Gossypium raimondii
Gorai.001G172200
I
0.708
ONIVA10G18680
Oryza nivara
ONIVA10G18680
I
0.708
Bo2g137070
Brassica oleracea
Bo2g137070
I
0.708
OLONG_017665
Oryza longistaminata
OLONG_017665
I
0.708
SapurV1A.0833s0010
Salix purpurea
SapurV1A.0833s0010
I
0.708
MADS56
Oryza sativa
OS10G0536100
I
0.708
MTR_7g075850
Medicago truncatula
MTR_7g075850
I
0.708
MADS56
Oryza indica
BGIOSGA033356
I
0.708
OBART10G16960
Oryza barthii
OBART10G16960
I
0.708
AGL3
Arabidopsis thaliana
AT2G03710
D
0.708
OB10G24040
Oryza brachyantha
OB10G24040
I
0.708
SapurV1A.0173s0340
Salix purpurea
SapurV1A.0173s0340
I
0.708
OGLUM10G16960
Oryza glumaepatula
OGLUM10G16960
I
0.708
MTR_8g033220
Medicago truncatula
MTR_8g033220
I
0.708
Lus10036543.g
Linum usitatissimum
Lus10036543.g
I
0.708
ORGLA10G0119200
Oryza glaberrima
ORGLA10G0119200
I
0.708
Bo1g031900
Brassica oleracea
Bo1g031900
I
0.708
Pavir.Ab00058
Panicum virgatum
Pavir.Ab00058
I
0.708
GSMUA_Achr7G23690_001
Musa acuminata
GSMUA_Achr7G23690_001
I
0.708
Traes_1DL_D5BBCA2D0
Triticum aestivum
Traes_1DL_D5BBCA2D0
I
0.708
TRIUR3_32699
Triticum urartu
TRIUR3_32699
I
0.708
Traes_1BL_F1D5BF5F8
Triticum aestivum
Traes_1BL_F1D5BF5F8
I
0.708
Traes_1AL_6B108514B
Triticum aestivum
Traes_1AL_6B108514B
I
0.708
Solyc06g035570.1
Solanum lycopersicum
Solyc06g035570.1
I
0.708
GRMZM2G137289
Zea mays
GRMZM2G137289
I
0.708
OMERI10G13430
Oryza meridionalis
OMERI10G13430
I
0.708
cassava38700.m1
Manihot esculenta
cassava38700.m1
I
0.708
BRADI3G32090
Brachypodium distachyon
BRADI3G32090
I
0.708
Q40882_PETHY
Petunia x hybrida
Q40882_PETHY
D
0.708
Bra026543
Brassica rapa
Bra026543
I
0.708
Ca_06280
Cicer arietinum
Ca_06280
I
0.708
VIT_18s0001g04810
Vitis vinifera
VIT_18s0001g04810
I
0.708
LPERR10G12950
Leersia perrieri
LPERR10G12950
I
0.708
Bra015645
Brassica rapa
Bra015645
I
0.708
GSMUA_Achr2G04350_001
Musa acuminata
GSMUA_Achr2G04350_001
I
0.708
Bo9g074400
Brassica oleracea
Bo9g074400
I
0.708
Carubv10017787m.g
Capsella rubella
Carubv10017787m.g
I
0.708
Bo7g081460
Brassica oleracea
Bo7g081460
I
0.708
F775_29801
Aegilops tauschii
F775_29801
I
0.708
GSMUA_Achr10G10990_001
Musa acuminata
GSMUA_Achr10G10990_001
I
0.708
Cagra.0447s0009
Capsella grandiflora
Cagra.0447s0009
I
0.708
GSMUA_Achr10G21480_001
Musa acuminata
GSMUA_Achr10G21480_001
I
0.708
Bostr.0556s0185
Boechera stricta
Bostr.0556s0185
I
0.708
Bra013662
Brassica rapa
Bra013662
I
0.708
Eucgr.E01330
Eucalyptus grandis
Eucgr.E01330
I
0.708
Bostr.7867s0083
Boechera stricta
Bostr.7867s0083
I
0.708
Ciclev10016427m.g
Citrus clementina
Ciclev10016427m.g
I
0.708
Traes_5BS_A19FD8E34
Triticum aestivum
Traes_5BS_A19FD8E34
I
0.705
H311_00382
Anncaliia algerae
H311_00382
I
0.704
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.700