Traes_5AS_E9E60BA43 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_5AS_E9E60BA43 T256572_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.729 0.729
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_5AS_E9E60BA43.2 MADS box 10 57

Links

Other MADS box family TFs
Other Triticum aestivum TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_09266 Triticum urartu TRIUR3_09266 I 0.979
Traes_5DS_82FA431DB Triticum aestivum Traes_5DS_82FA431DB I 0.917
F775_15098 Aegilops tauschii F775_15098 I 0.872
Traes_7DS_7F8C88C92 Triticum aestivum Traes_7DS_7F8C88C92 I 0.872
F775_15097 Aegilops tauschii F775_15097 I 0.854
Traes_7AS_EFE436F1D Triticum aestivum Traes_7AS_EFE436F1D I 0.833
Traes_7BS_209950516 Triticum aestivum Traes_7BS_209950516 I 0.812
OB06G22200 Oryza brachyantha OB06G22200 I 0.792
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.792
Traes_7DS_7A30E1397 Triticum aestivum Traes_7DS_7A30E1397 I 0.792
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.792
OBART06G14060 Oryza barthii OBART06G14060 I 0.792
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.792
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.792
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.792
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.792
OS06G0347700 Oryza sativa OS06G0347700 I 0.792
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.792
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.792
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.771
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.750
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.750
MTR_5g031000 Medicago truncatula MTR_5g031000 I 0.750
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.750
Solyc01g106170.2 Solanum lycopersicum Solyc01g106170.2 I 0.750
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.750
Si007187m.g Setaria italica Si007187m.g I 0.750
Cla023427 Citrullus lanatus Cla023427 I 0.750
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.750
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.750
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.750
GSMUA_Achr10G30040_001 Musa acuminata GSMUA_Achr10G30040_001 I 0.750
MTR_4g093030 Medicago truncatula MTR_4g093030 I 0.750
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.750
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.750
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.750
F775_05654 Aegilops tauschii F775_05654 I 0.750
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.750
Bo1g007520 Brassica oleracea Bo1g007520 I 0.750
Bra011509 Brassica rapa Bra011509 I 0.750
AMTR_s00109p00015260 Amborella trichopoda AMTR_s00109p00015260 I 0.750
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.750
Bra029314 Brassica rapa Bra029314 I 0.750
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.750
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.750
PK27158.1 Cannabis sativa PK27158.1 I 0.743
PK08595.1 Cannabis sativa PK08595.1 I 0.729
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.729
ANR1 Arabidopsis thaliana AT2G14210 I 0.729
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.729
Eucgr.H04618 Eucalyptus grandis Eucgr.H04618 I 0.729
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.729
Si003917m.g Setaria italica Si003917m.g I 0.729
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.729
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.729
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.729
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.729
gene26429-v1.0-hybrid Fragaria vesca gene26429-v1.0-hybrid I 0.729
AGL16 Arabidopsis thaliana AT3G57230 D 0.729
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.729
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.729
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.729
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.729
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.729
cassava4651.m1 Manihot esculenta cassava4651.m1 I 0.729
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.729
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.729
Carubv10027093m.g Capsella rubella Carubv10027093m.g I 0.729
MADS31 Oryza sativa OS04G0614100 I 0.729
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.729
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.729
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.729
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.729
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.729
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.729
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.729
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.729
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.729
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.729
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I 0.729
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.729
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.729
MDP0000475549 Malus domestica MDP0000475549 I 0.729
GSMUA_Achr9G15540_001 Musa acuminata GSMUA_Achr9G15540_001 I 0.729
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.729
SapurV1A.0004s0740 Salix purpurea SapurV1A.0004s0740 I 0.729
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.729
Bra017638 Brassica rapa Bra017638 I 0.729
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.729
MDP0000783966 Malus domestica MDP0000783966 I 0.729
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.729
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.729
OBART04G25610 Oryza barthii OBART04G25610 I 0.729
Solyc12g088080.1 Solanum lycopersicum Solyc12g088080.1 I 0.729
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.729
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.729
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.729
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.729
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I 0.729
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.729
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.729
MDP0000144516 Malus domestica MDP0000144516 I 0.729
MDP0000135652 Malus domestica MDP0000135652 I 0.729
Bo7g116760 Brassica oleracea Bo7g116760 I 0.729
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.729
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.729
gene22696-v1.0-hybrid Fragaria vesca gene22696-v1.0-hybrid I 0.723
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.708
mgf008634m Mimulus guttatus mgf008634m I 0.708
Cucsa.248870 Cucumis sativus Cucsa.248870 I 0.708
Pm016579 Prunus mume Pm016579 I 0.708
Pm004349 Prunus mume Pm004349 I 0.708
Cla017565 Citrullus lanatus Cla017565 I 0.708
Ca_24925 Cicer arietinum Ca_24925 I 0.708
Ca_14956 Cicer arietinum Ca_14956 I 0.708
mgf021543m Mimulus guttatus mgf021543m I 0.708
Pm021962 Prunus mume Pm021962 I 0.708
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.708
cassava21958.m1 Manihot esculenta cassava21958.m1 I 0.708
29804.m001536 Ricinus communis 29804.m001536 I 0.708
29596.m000699 Ricinus communis 29596.m000699 I 0.708
cassava45813.m1 Manihot esculenta cassava45813.m1 I 0.708
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.708
orange1.1g025240m.g Citrus sinensis orange1.1g025240m.g I 0.708
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.708
Pavir.Db00414 Panicum virgatum Pavir.Db00414 I 0.708
Pavir.Ea01057 Panicum virgatum Pavir.Ea01057 I 0.708
MDP0000254052 Malus domestica MDP0000254052 I 0.708
MDP0000234911 Malus domestica MDP0000234911 I 0.708
MDP0000136650 Malus domestica MDP0000136650 I 0.708
MDP0000156783 Malus domestica MDP0000156783 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I 0.708
PK01421.1 Cannabis sativa PK01421.1 I 0.708
PK27820.1 Cannabis sativa PK27820.1 I 0.708
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.708
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.708
Gorai.013G053800 Gossypium raimondii Gorai.013G053800 I 0.708
Ciclev10032519m.g Citrus clementina Ciclev10032519m.g I 0.708
Eucgr.B03514 Eucalyptus grandis Eucgr.B03514 I 0.708
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.708
Carubv10006544m.g Capsella rubella Carubv10006544m.g I 0.708
Carubv10006453m.g Capsella rubella Carubv10006453m.g I 0.708
Aquca_005_00633 Aquilegia coerulea Aquca_005_00633 I 0.708
Aquca_035_00266 Aquilegia coerulea Aquca_035_00266 I 0.708
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I 0.708
Eucgr.G03284 Eucalyptus grandis Eucgr.G03284 I 0.708
evm.TU.supercontig_125.55 Carica papaya evm.TU.supercontig_125.55 I 0.708
Gorai.008G112400 Gossypium raimondii Gorai.008G112400 I 0.708
Gorai.009G227500 Gossypium raimondii Gorai.009G227500 I 0.708
Gorai.010G032700 Gossypium raimondii Gorai.010G032700 I 0.708
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
Gorai.004G169000 Gossypium raimondii Gorai.004G169000 I 0.708
evm.TU.supercontig_177.14 Carica papaya evm.TU.supercontig_177.14 I 0.708
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.708
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.708
Aquca_003_00853 Aquilegia coerulea Aquca_003_00853 I 0.708
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.708
MTR_0003s0590 Medicago truncatula MTR_0003s0590 I 0.708
OB02G29310 Oryza brachyantha OB02G29310 I 0.708
OB02G38310 Oryza brachyantha OB02G38310 I 0.708
OB04G22330 Oryza brachyantha OB04G22330 I 0.708
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.708
GSMUA_Achr3G20280_001 Musa acuminata GSMUA_Achr3G20280_001 I 0.708
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.708
LPERR02G17700 Leersia perrieri LPERR02G17700 I 0.708
OB04G32080 Oryza brachyantha OB04G32080 I 0.708
OBART02G21870 Oryza barthii OBART02G21870 I 0.708
OLONG_004860 Oryza longistaminata OLONG_004860 I 0.708
OLONG_009563 Oryza longistaminata OLONG_009563 I 0.708
OLONG_016283 Oryza longistaminata OLONG_016283 I 0.708
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.708
OGLUM04G06810 Oryza glumaepatula OGLUM04G06810 I 0.708
OGLUM02G31980 Oryza glumaepatula OGLUM02G31980 I 0.708
OBART02G31280 Oryza barthii OBART02G31280 I 0.708
OBART04G07050 Oryza barthii OBART04G07050 I 0.708
OBART04G15020 Oryza barthii OBART04G15020 I 0.708
OGLUM02G22050 Oryza glumaepatula OGLUM02G22050 I 0.708
GRMZM2G316366 Zea mays GRMZM2G316366 I 0.708
GRMZM2G052045 Zea mays GRMZM2G052045 I 0.708
Bo2g161560 Brassica oleracea Bo2g161560 I 0.708
Bo3g153080 Brassica oleracea Bo3g153080 I 0.708
Bo7g025330 Brassica oleracea Bo7g025330 I 0.708
Bra010623 Brassica rapa Bra010623 I 0.708
Bo1g003270 Brassica oleracea Bo1g003270 I 0.708
BGIOSGA016106 Oryza indica BGIOSGA016106 I 0.708
AMTR_s00046p00208680 Amborella trichopoda AMTR_s00046p00208680 I 0.708
AGL21 Arabidopsis thaliana AT4G37940 I 0.708
BGIOSGA008494 Oryza indica BGIOSGA008494 I 0.708
BGIOSGA016105 Oryza indica BGIOSGA016105 I 0.708
Bra011797 Brassica rapa Bra011797 I 0.708
Bra014628 Brassica rapa Bra014628 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
GLYMA14G36221 Glycine max GLYMA14G36221 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.708
GLYMA02G38091 Glycine max GLYMA02G38091 I 0.708
BRADI1G77020 Brachypodium distachyon BRADI1G77020 I 0.708
BRADI3G46920 Brachypodium distachyon BRADI3G46920 I 0.708
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I 0.708
OLONG_024179 Oryza longistaminata OLONG_024179 I 0.708
OMERI02G21410 Oryza meridionalis OMERI02G21410 I 0.708
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.708
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.708
Sb10g026690 Sorghum bicolor Sb10g026690 I 0.708
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.708
Sb04g024010 Sorghum bicolor Sb04g024010 I 0.708
Q9FVN1_MAIZE Zea mays Q9FVN1_MAIZE D 0.708
POPTR_0005s19440 Populus trichocarpa POPTR_0005s19440 I 0.708
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.708
PRUPE_ppa021434mg Prunus persica PRUPE_ppa021434mg I 0.708
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.708
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
TCM_024579 Theobroma cacao TCM_024579 I 0.708
TCM_034549 Theobroma cacao TCM_034549 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
TCM_005818 Theobroma cacao TCM_005818 I 0.708
TCM_000931 Theobroma cacao TCM_000931 I 0.708
Si014885m.g Setaria italica Si014885m.g I 0.708
Si019337m.g Setaria italica Si019337m.g I 0.708
Si019880m.g Setaria italica Si019880m.g I 0.708
TT16 Vitis vinifera VIT_10s0042g00820 I 0.708
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.708
OPUNC02G19600 Oryza punctata OPUNC02G19600 I 0.708
OPUNC02G29000 Oryza punctata OPUNC02G29000 I 0.708
OPUNC12G11630 Oryza punctata OPUNC12G11630 I 0.708
ORGLA02G0267800 Oryza glaberrima ORGLA02G0267800 I 0.708
ONIVA04G13150 Oryza nivara ONIVA04G13150 I 0.708
ONIVA04G05310 Oryza nivara ONIVA04G05310 I 0.708
OMERI02G30060 Oryza meridionalis OMERI02G30060 I 0.708
ONIVA02G24100 Oryza nivara ONIVA02G24100 I 0.708
ONIVA02G34790 Oryza nivara ONIVA02G34790 I 0.708
ORGLA04G0053100 Oryza glaberrima ORGLA04G0053100 I 0.708
ORGLA04G0120000 Oryza glaberrima ORGLA04G0120000 I 0.708
MADS57 Oryza sativa OS02G0731200 I 0.708
MADS25 Oryza sativa OS04G0304400 I 0.708
OS04G0461300 Oryza sativa OS04G0461300 I 0.708
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.708
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.708
MADS27 Oryza sativa OS02G0579600 I 0.708
ORUFI02G32980 Oryza rufipogon ORUFI02G32980 I 0.708
ORUFI04G16410 Oryza rufipogon ORUFI04G16410 I 0.708
ORUFI04G08040 Oryza rufipogon ORUFI04G08040 I 0.708
ORUFI02G22950 Oryza rufipogon ORUFI02G22950 I 0.708
Traes_7AS_360247894 Triticum aestivum Traes_7AS_360247894 I 0.700