Traes_5DS_B288EE729 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_5DS_B288EE729 T256583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.750 0.750
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.750 0.750
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.750 0.750
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.729 0.729
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.729 0.729
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708 0.708
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.708 0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708 0.708
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708 0.708
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.708 0.708
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.708 0.708
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_5DS_B288EE729.1 MADS box 10 57

Links

Other MADS box family TFs
Other Triticum aestivum TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RO3G_00114 Rhizopus oryzae RO3G_00114 N 0.000
RO3G_07535 Rhizopus oryzae RO3G_07535 N 0.000