CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_6AS_9AA76345D
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_6AS_9AA76345D
T256588_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_6AS_9AA76345D.1
MADS box
11
58
RIQDATGRQVCYSKRRSGIMKKARELAVLCDAQVAVVVLSSTGKHHHF
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TRIUR3_33318
Triticum urartu
TRIUR3_33318
I
1.000
F775_21044
Aegilops tauschii
F775_21044
I
0.917
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.800
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.771
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.771
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.771
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.771
F775_30609
Aegilops tauschii
F775_30609
I
0.759
Sb10g029810
Sorghum bicolor
Sb10g029810
I
0.750
MADS16
Oryza sativa
OS06G0712700
D
0.750
Traes_6BS_8F1EC63B9
Triticum aestivum
Traes_6BS_8F1EC63B9
N
0.750
Pavir.J11672
Panicum virgatum
Pavir.J11672
I
0.750
Pavir.Db00185
Panicum virgatum
Pavir.Db00185
I
0.750
ORUFI06G29170
Oryza rufipogon
ORUFI06G29170
I
0.750
ONIVA06G29820
Oryza nivara
ONIVA06G29820
I
0.750
OBART06G27230
Oryza barthii
OBART06G27230
I
0.750
OB06G35020
Oryza brachyantha
OB06G35020
I
0.750
LPERR06G22780
Leersia perrieri
LPERR06G22780
I
0.750
GRMZM2G139073
Zea mays
GRMZM2G139073
I
0.750
ORGLA06G0229200
Oryza glaberrima
ORGLA06G0229200
I
0.750
OGLUM06G28660
Oryza glumaepatula
OGLUM06G28660
I
0.750
BGIOSGA020546
Oryza indica
BGIOSGA020546
I
0.750
OMERI06G27290
Oryza meridionalis
OMERI06G27290
I
0.750
OLONG_004226
Oryza longistaminata
OLONG_004226
I
0.750
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.729
Si007221m.g
Setaria italica
Si007221m.g
I
0.729
OMERI06G24380
Oryza meridionalis
OMERI06G24380
I
0.718
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707