Traes_7AS_360247894 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_7AS_360247894 T256602_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.767 0.767
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.767 0.767
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.733 0.733
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.733 0.733
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.733 0.733
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.700 0.700
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.700 0.700
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.700 0.700
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.700 0.700
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.700 0.700
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.700 0.700
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.700 0.700
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.700 0.700
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.700 0.700
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.700 0.700
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.700 0.700
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.700 0.700
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.700 0.700
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.700 0.700
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.700 0.700
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_7AS_360247894.1 MADS box 1 30

Links

Other MADS box family TFs
Other Triticum aestivum TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_7BS_9D42F9BEA Triticum aestivum Traes_7BS_9D42F9BEA I 1.000
Traes_5AS_029A65B0A Triticum aestivum Traes_5AS_029A65B0A I 1.000
TRIUR3_09267 Triticum urartu TRIUR3_09267 I 1.000
Traes_5DS_3EBE121C7 Triticum aestivum Traes_5DS_3EBE121C7 I 1.000
TRIUR3_09108 Triticum urartu TRIUR3_09108 I 0.967
Traes_7AS_8123257BA Triticum aestivum Traes_7AS_8123257BA I 0.967
OB04G15510 Oryza brachyantha OB04G15510 I 0.867
OPUNC04G05760 Oryza punctata OPUNC04G05760 I 0.867
Si003917m.g Setaria italica Si003917m.g I 0.867
Pavir.Ea01057 Panicum virgatum Pavir.Ea01057 I 0.833
mgf021543m Mimulus guttatus mgf021543m I 0.833
Lus10015766.g Linum usitatissimum Lus10015766.g I 0.800
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.800
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.800
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.800
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.800
OBART01G39740 Oryza barthii OBART01G39740 I 0.800
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.800
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.800
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.800
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.800
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.800
MADS21 Oryza sativa OS01G0886200 I 0.800
Pavir.Cb00838 Panicum virgatum Pavir.Cb00838 I 0.800
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.800
Eucgr.H04618 Eucalyptus grandis Eucgr.H04618 I 0.767
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.767
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.767
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.767
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.767
MADS23 Oryza sativa OS08G0431900 I 0.767
Bra003278 Brassica rapa Bra003278 I 0.767
Bo6g072840 Brassica oleracea Bo6g072840 I 0.767
Bo7g116760 Brassica oleracea Bo7g116760 I 0.767
Bra017638 Brassica rapa Bra017638 I 0.767
Bo4g111230 Brassica oleracea Bo4g111230 I 0.767
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.767
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.767
GSMUA_Achr9G15540_001 Musa acuminata GSMUA_Achr9G15540_001 I 0.767
Bra030228 Brassica rapa Bra030228 I 0.733
Bra011509 Brassica rapa Bra011509 I 0.733
TRIUR3_03219 Triticum urartu TRIUR3_03219 I 0.733
Si015525m.g Setaria italica Si015525m.g I 0.733
OS06G0217300 Oryza sativa OS06G0217300 I 0.733
Q4U0F1_WHEAT Triticum aestivum Q4U0F1_WHEAT D 0.733
AMTR_s00013p00114420 Amborella trichopoda AMTR_s00013p00114420 I 0.733
BRADI1G45807 Brachypodium distachyon BRADI1G45807 I 0.733
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.733
Pm021962 Prunus mume Pm021962 I 0.733
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.733
Bo4g149800 Brassica oleracea Bo4g149800 I 0.733
BGIOSGA021662 Oryza indica BGIOSGA021662 I 0.733
MDP0000268317 Malus domestica MDP0000268317 I 0.733
BGIOSGA008983 Oryza indica BGIOSGA008983 I 0.733
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.733
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.733
ORGLA06G0069900 Oryza glaberrima ORGLA06G0069900 I 0.733
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.733
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.733
cassava4651.m1 Manihot esculenta cassava4651.m1 I 0.733
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.733
TRIUR3_09266 Triticum urartu TRIUR3_09266 I 0.733
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.733
OMERI06G08590 Oryza meridionalis OMERI06G08590 I 0.733
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.733
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.733
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.733
OB06G16920 Oryza brachyantha OB06G16920 I 0.733
MAD55_ORYSJ Oryza sativa MAD55_ORYSJ D 0.733
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.733
OPUNC06G07080 Oryza punctata OPUNC06G07080 I 0.733
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.733
OB12G15620 Oryza brachyantha OB12G15620 I 0.700
OBART01G29490 Oryza barthii OBART01G29490 N 0.700
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.700
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.700
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.700
ORUFI01G32600 Oryza rufipogon ORUFI01G32600 N 0.700
F775_30822 Aegilops tauschii F775_30822 I 0.700
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.700
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.700
mgf015964m Mimulus guttatus mgf015964m I 0.700
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.700
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.700
GSMUA_Achr3G15930_001 Musa acuminata GSMUA_Achr3G15930_001 I 0.700
mgf022278m Mimulus guttatus mgf022278m I 0.700
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.700
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.700
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.700
Lus10007100.g Linum usitatissimum Lus10007100.g I 0.700
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.700
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.700
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.700
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.700
SVP Arabidopsis thaliana AT2G22540 D 0.700
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.700
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.700
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.700
BGIOSGA000892 Oryza indica BGIOSGA000892 N 0.700
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.700
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.700
OB01G38450 Oryza brachyantha OB01G38450 N 0.700
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.700
MLOC_57890 Hordeum vulgare MLOC_57890 I 0.700
LPERR12G05240 Leersia perrieri LPERR12G05240 I 0.700
ORGLA01G0242900 Oryza glaberrima ORGLA01G0242900 N 0.700
OBART12G05940 Oryza barthii OBART12G05940 I 0.700
OGLUM01G33550 Oryza glumaepatula OGLUM01G33550 N 0.700
ONIVA12G05640 Oryza nivara ONIVA12G05640 I 0.700
OPUNC01G29290 Oryza punctata OPUNC01G29290 N 0.700
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.700
Si019985m.g Setaria italica Si019985m.g I 0.700
LPERR01G25340 Leersia perrieri LPERR01G25340 N 0.700
Solyc12g038510.1 Solanum lycopersicum Solyc12g038510.1 I 0.700
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.700
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.700
Sb10g007380 Sorghum bicolor Sb10g007380 I 0.700
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.700
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.700
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.700
OPUNC12G05660 Oryza punctata OPUNC12G05660 I 0.700
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.700
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.700
Sb04g000500 Sorghum bicolor Sb04g000500 I 0.700
Bra038511 Brassica rapa Bra038511 I 0.700
Traes_5AS_7BFB385EF Triticum aestivum Traes_5AS_7BFB385EF I 0.700
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.700
TRIUR3_28215 Triticum urartu TRIUR3_28215 I 0.700
Bo8g101000 Brassica oleracea Bo8g101000 I 0.700
SVP Vitis vinifera VIT_00s0313g00070 I 0.700
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.700
ORUFI12G06810 Oryza rufipogon ORUFI12G06810 I 0.700
OGLUM12G07150 Oryza glumaepatula OGLUM12G07150 I 0.700
OLONG_006914 Oryza longistaminata OLONG_006914 I 0.700
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.700
BRADI4G40350 Brachypodium distachyon BRADI4G40350 I 0.700
Traes_5DS_16243E52C Triticum aestivum Traes_5DS_16243E52C I 0.700
Traes_5AS_E9E60BA43 Triticum aestivum Traes_5AS_E9E60BA43 I 0.700
ONIVA01G33710 Oryza nivara ONIVA01G33710 N 0.700
OMERI12G04040 Oryza meridionalis OMERI12G04040 I 0.700
MADS32 Oryza sativa OS01G0726400 N 0.700
Traes_7DS_7A30E1397 Triticum aestivum Traes_7DS_7A30E1397 I 0.700
MADS13 Oryza sativa OS12G0207000 I 0.700