CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_7BL_F5B6736D0
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_7BL_F5B6736D0
T256611_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q9FVN1_MAIZE
M10982_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.750
0.750
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.708
0.708
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_7BL_F5B6736D0.1
MADS box
10
57
KIENKTSRQVTFSKRKSGLFKKGKELGILCDAQVGIFIFSNTGRLYEY
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
201 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_4AL_72A03AD23
Triticum aestivum
Traes_4AL_72A03AD23
I
0.958
Traes_1AS_24511D656
Triticum aestivum
Traes_1AS_24511D656
I
0.812
Traes_1BS_7366111C0
Triticum aestivum
Traes_1BS_7366111C0
I
0.812
Traes_1BS_7366111C01
Triticum aestivum
Traes_1BS_7366111C01
I
0.812
Traes_1DS_A0312C264
Triticum aestivum
Traes_1DS_A0312C264
I
0.812
F775_18161
Aegilops tauschii
F775_18161
I
0.812
OLONG_018231
Oryza longistaminata
OLONG_018231
I
0.792
OGLUM06G15040
Oryza glumaepatula
OGLUM06G15040
I
0.792
OBART06G14060
Oryza barthii
OBART06G14060
I
0.792
OMERI06G15180
Oryza meridionalis
OMERI06G15180
I
0.792
F775_20565
Aegilops tauschii
F775_20565
I
0.792
ORUFI06G14980
Oryza rufipogon
ORUFI06G14980
I
0.792
Traes_1AS_3232D5589
Triticum aestivum
Traes_1AS_3232D5589
I
0.792
Traes_1DS_F70AAB507
Triticum aestivum
Traes_1DS_F70AAB507
I
0.792
F775_08934
Aegilops tauschii
F775_08934
I
0.792
ORGLA06G0125600
Oryza glaberrima
ORGLA06G0125600
I
0.792
OPUNC06G13170
Oryza punctata
OPUNC06G13170
I
0.792
ONIVA06G16870
Oryza nivara
ONIVA06G16870
I
0.792
OS06G0347700
Oryza sativa
OS06G0347700
I
0.792
BGIOSGA022872
Oryza indica
BGIOSGA022872
I
0.792
TRIUR3_19891
Triticum urartu
TRIUR3_19891
I
0.771
Traes_2DL_662837152
Triticum aestivum
Traes_2DL_662837152
I
0.771
F775_27066
Aegilops tauschii
F775_27066
I
0.771
LPERR04G11770
Leersia perrieri
LPERR04G11770
I
0.771
Traes_2BL_3E613DE21
Triticum aestivum
Traes_2BL_3E613DE21
I
0.771
Thhalv10014716m.g
Eutrema salsugineum
Thhalv10014716m.g
I
0.771
Carubv10026982m.g
Capsella rubella
Carubv10026982m.g
I
0.771
OB06G22200
Oryza brachyantha
OB06G22200
I
0.771
Traes_2AL_267502097
Triticum aestivum
Traes_2AL_267502097
I
0.771
BRADI5G12440
Brachypodium distachyon
BRADI5G12440
I
0.771
AGL72
Arabidopsis thaliana
AT5G51860
I
0.750
OLONG_016283
Oryza longistaminata
OLONG_016283
I
0.750
AMTR_s00109p00015260
Amborella trichopoda
AMTR_s00109p00015260
I
0.750
OGLUM02G22050
Oryza glumaepatula
OGLUM02G22050
I
0.750
OS04G0461300
Oryza sativa
OS04G0461300
I
0.750
OBART02G21870
Oryza barthii
OBART02G21870
I
0.750
OBART04G15020
Oryza barthii
OBART04G15020
I
0.750
OLONG_024179
Oryza longistaminata
OLONG_024179
I
0.750
ONIVA02G24100
Oryza nivara
ONIVA02G24100
I
0.750
ORUFI02G22950
Oryza rufipogon
ORUFI02G22950
I
0.750
BGIOSGA008494
Oryza indica
BGIOSGA008494
I
0.750
Sb04g024010
Sorghum bicolor
Sb04g024010
I
0.750
ORUFI04G16410
Oryza rufipogon
ORUFI04G16410
I
0.750
MADS27
Oryza sativa
OS02G0579600
I
0.750
Q9FVN1_MAIZE
Zea mays
Q9FVN1_MAIZE
D
0.750
ORGLA04G0120000
Oryza glaberrima
ORGLA04G0120000
I
0.750
Sb06g019040
Sorghum bicolor
Sb06g019040
I
0.750
OB02G29310
Oryza brachyantha
OB02G29310
I
0.750
Si019337m.g
Setaria italica
Si019337m.g
I
0.750
ONIVA04G13150
Oryza nivara
ONIVA04G13150
I
0.750
scaffold_801621.1
Arabidopsis lyrata
scaffold_801621.1
I
0.750
OPUNC04G12890
Oryza punctata
OPUNC04G12890
I
0.750
OPUNC02G19600
Oryza punctata
OPUNC02G19600
I
0.750
OMERI02G21410
Oryza meridionalis
OMERI02G21410
I
0.750
OB04G22330
Oryza brachyantha
OB04G22330
I
0.750
LPERR02G17700
Leersia perrieri
LPERR02G17700
I
0.750
GRMZM2G316366
Zea mays
GRMZM2G316366
I
0.750
GLYMA01G02525
Glycine max
GLYMA01G02525
I
0.750
Bostr.15774s0334
Boechera stricta
Bostr.15774s0334
I
0.750
Cagra.0277s0030
Capsella grandiflora
Cagra.0277s0030
I
0.750
GRMZM2G055782
Zea mays
GRMZM2G055782
I
0.750
LPERR08G12860
Leersia perrieri
LPERR08G12860
I
0.750
MTR_5g031000
Medicago truncatula
MTR_5g031000
I
0.750
BRADI3G46920
Brachypodium distachyon
BRADI3G46920
I
0.750
GLYMA09G33451
Glycine max
GLYMA09G33451
I
0.750
MDP0000783966
Malus domestica
MDP0000783966
I
0.729
Pavir.Aa01540
Panicum virgatum
Pavir.Aa01540
I
0.729
Bra028283
Brassica rapa
Bra028283
I
0.729
Pavir.Ab02921
Panicum virgatum
Pavir.Ab02921
I
0.729
Sb06g028420
Sorghum bicolor
Sb06g028420
I
0.729
Sb04g028960
Sorghum bicolor
Sb04g028960
I
0.729
Thhalv10022995m.g
Eutrema salsugineum
Thhalv10022995m.g
I
0.729
LjSGA_021013.1
Lotus japonicus
LjSGA_021013.1
I
0.729
PRUPE_ppa024736mg
Prunus persica
PRUPE_ppa024736mg
I
0.729
Thhalv10015303m.g
Eutrema salsugineum
Thhalv10015303m.g
I
0.729
Pavir.Gb01527
Panicum virgatum
Pavir.Gb01527
I
0.729
Si012517m.g
Setaria italica
Si012517m.g
I
0.729
Pavir.Ga00461
Panicum virgatum
Pavir.Ga00461
I
0.729
Pavir.Ga01454
Panicum virgatum
Pavir.Ga01454
I
0.729
Pavir.Fb01587
Panicum virgatum
Pavir.Fb01587
I
0.729
Eucgr.I02600
Eucalyptus grandis
Eucgr.I02600
I
0.729
AGL15
Vitis vinifera
VIT_13s0158g00100
I
0.729
Bostr.13083s0004
Boechera stricta
Bostr.13083s0004
I
0.729
Bostr.15774s0333
Boechera stricta
Bostr.15774s0333
I
0.729
ANR1
Vitis vinifera
VIT_18s0001g07900
I
0.729
mgf025830m
Mimulus guttatus
mgf025830m
I
0.729
Pm021962
Prunus mume
Pm021962
I
0.729
mgf021543m
Mimulus guttatus
mgf021543m
I
0.729
Cla023427
Citrullus lanatus
Cla023427
I
0.729
AGL71
Arabidopsis lyrata
Al_scaffold_0008_1558
I
0.729
Cagra.3821s0004
Capsella grandiflora
Cagra.3821s0004
I
0.729
Solyc01g106170.2
Solanum lycopersicum
Solyc01g106170.2
I
0.729
Si019880m.g
Setaria italica
Si019880m.g
I
0.729
gene25618-v1.0-hybrid
Fragaria vesca
gene25618-v1.0-hybrid
I
0.729
mgf019667m
Mimulus guttatus
mgf019667m
I
0.729
Carubv10027093m.g
Capsella rubella
Carubv10027093m.g
I
0.729
Carubv10015972m.g
Capsella rubella
Carubv10015972m.g
I
0.729
ANR1
Arabidopsis thaliana
AT2G14210
I
0.729
MDP0000228942
Malus domestica
MDP0000228942
I
0.729
Sb07g021110
Sorghum bicolor
Sb07g021110
I
0.729
GRMZM2G135018
Zea mays
GRMZM2G135018
I
0.729
OMERI08G12880
Oryza meridionalis
OMERI08G12880
I
0.729
GRMZM2G044408
Zea mays
GRMZM2G044408
I
0.729
GRMZM2G032905
Zea mays
GRMZM2G032905
I
0.729
AGL16
Arabidopsis lyrata
fgenesh2_kg.5__2158__AT3G57230.1
I
0.729
Bo1g007520
Brassica oleracea
Bo1g007520
I
0.729
F775_15097
Aegilops tauschii
F775_15097
I
0.729
Bra011509
Brassica rapa
Bra011509
I
0.729
GSMUA_Achr3G07310_001
Musa acuminata
GSMUA_Achr3G07310_001
I
0.729
OGLUM04G14880
Oryza glumaepatula
OGLUM04G14880
I
0.729
GRMZM2G005155
Zea mays
GRMZM2G005155
I
0.729
AGL71
Arabidopsis thaliana
AT5G51870
I
0.729
Bra029155
Brassica rapa
Bra029155
I
0.729
gene22696-v1.0-hybrid
Fragaria vesca
gene22696-v1.0-hybrid
I
0.723
PK27158.1
Cannabis sativa
PK27158.1
I
0.714
gene26429-v1.0-hybrid
Fragaria vesca
gene26429-v1.0-hybrid
I
0.708
GRMZM2G052045
Zea mays
GRMZM2G052045
I
0.708
MDP0000156783
Malus domestica
MDP0000156783
I
0.708
MDP0000136650
Malus domestica
MDP0000136650
I
0.708
Gorai.003G090800
Gossypium raimondii
Gorai.003G090800
I
0.708
GRMZM2G128953
Zea mays
GRMZM2G128953
I
0.708
GSMUA_Achr3G20280_001
Musa acuminata
GSMUA_Achr3G20280_001
I
0.708
Bostr.20505s0022
Boechera stricta
Bostr.20505s0022
I
0.708
GSMUA_Achr3G23580_001
Musa acuminata
GSMUA_Achr3G23580_001
I
0.708
LPERR02G25570
Leersia perrieri
LPERR02G25570
I
0.708
Cagra.0578s0054
Capsella grandiflora
Cagra.0578s0054
I
0.708
Cagra.4003s0006
Capsella grandiflora
Cagra.4003s0006
I
0.708
Carubv10027142m.g
Capsella rubella
Carubv10027142m.g
I
0.708
Carubv10017951m.g
Capsella rubella
Carubv10017951m.g
I
0.708
GSMUA_Achr10G30040_001
Musa acuminata
GSMUA_Achr10G30040_001
I
0.708
Eucgr.G03284
Eucalyptus grandis
Eucgr.G03284
I
0.708
orange1.1g037016m.g
Citrus sinensis
orange1.1g037016m.g
I
0.708
F775_05654
Aegilops tauschii
F775_05654
I
0.708
Thhalv10004954m.g
Eutrema salsugineum
Thhalv10004954m.g
I
0.708
SapurV1A.2345s0030
Salix purpurea
SapurV1A.2345s0030
I
0.708
SapurV1A.1370s0060
Salix purpurea
SapurV1A.1370s0060
I
0.708
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.708
BRADI3G00730
Brachypodium distachyon
BRADI3G00730
I
0.708
chr6.CM0055.180.nc
Lotus japonicus
chr6.CM0055.180.nc
I
0.708
PK27820.1
Cannabis sativa
PK27820.1
I
0.708
Thhalv10026116m.g
Eutrema salsugineum
Thhalv10026116m.g
I
0.708
SapurV1A.0019s1110
Salix purpurea
SapurV1A.0019s1110
I
0.708
Bra028282
Brassica rapa
Bra028282
I
0.708
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.708
MDP0000475549
Malus domestica
MDP0000475549
I
0.708
MDP0000254052
Malus domestica
MDP0000254052
I
0.708
Pavir.Aa00445
Panicum virgatum
Pavir.Aa00445
I
0.708
GLYMA14G36221
Glycine max
GLYMA14G36221
I
0.708
Pavir.Gb00526
Panicum virgatum
Pavir.Gb00526
I
0.708
Bra017638
Brassica rapa
Bra017638
I
0.708
Pavir.Da00991
Panicum virgatum
Pavir.Da00991
I
0.708
MDP0000234911
Malus domestica
MDP0000234911
I
0.708
mgf023192m
Mimulus guttatus
mgf023192m
I
0.708
TCM_000931
Theobroma cacao
TCM_000931
I
0.708
AGL16
Arabidopsis thaliana
AT3G57230
D
0.708
Solyc04g076680.2
Solanum lycopersicum
Solyc04g076680.2
I
0.708
Solyc02g091550.1
Solanum lycopersicum
Solyc02g091550.1
I
0.708
OMERI02G30060
Oryza meridionalis
OMERI02G30060
I
0.708
OLONG_011763
Oryza longistaminata
OLONG_011763
I
0.708
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.708
Traes_2AL_8DF89AA72
Triticum aestivum
Traes_2AL_8DF89AA72
I
0.708
OGLUM08G16360
Oryza glumaepatula
OGLUM08G16360
I
0.708
AMTR_s00046p00208680
Amborella trichopoda
AMTR_s00046p00208680
I
0.708
OLONG_004860
Oryza longistaminata
OLONG_004860
I
0.708
Bo00946s010
Brassica oleracea
Bo00946s010
I
0.708
Si014885m.g
Setaria italica
Si014885m.g
I
0.708
ORUFI02G32980
Oryza rufipogon
ORUFI02G32980
I
0.708
MADS57
Oryza sativa
OS02G0731200
I
0.708
PGSC0003DMG400023729
Solanum tuberosum
PGSC0003DMG400023729
I
0.708
PGSC0003DMG400009349
Solanum tuberosum
PGSC0003DMG400009349
I
0.708
ORGLA02G0267800
Oryza glaberrima
ORGLA02G0267800
I
0.708
OPUNC08G13690
Oryza punctata
OPUNC08G13690
I
0.708
ONIVA02G34790
Oryza nivara
ONIVA02G34790
I
0.708
BGIOSGA026939
Oryza indica
BGIOSGA026939
I
0.708
ONIVA08G16700
Oryza nivara
ONIVA08G16700
I
0.708
OPUNC02G29000
Oryza punctata
OPUNC02G29000
I
0.708
Bo7g116760
Brassica oleracea
Bo7g116760
I
0.708
Traes_2DL_6CD5A5CD9
Triticum aestivum
Traes_2DL_6CD5A5CD9
I
0.708
cassava33801.m1
Manihot esculenta
cassava33801.m1
I
0.708
cassava26340.m1
Manihot esculenta
cassava26340.m1
I
0.708
OB02G38310
Oryza brachyantha
OB02G38310
I
0.708
OB04G32080
Oryza brachyantha
OB04G32080
I
0.708
Cucsa.194800
Cucumis sativus
Cucsa.194800
I
0.708
Cucsa.331900
Cucumis sativus
Cucsa.331900
I
0.708
MLOC_12133
Hordeum vulgare
MLOC_12133
I
0.708
AC233912.1_FG001
Zea mays
AC233912.1_FG001
I
0.708
MTR_4g093030
Medicago truncatula
MTR_4g093030
I
0.708
MTR_5g066180
Medicago truncatula
MTR_5g066180
I
0.708
Cla006973
Citrullus lanatus
Cla006973
I
0.708
Ca_19854
Cicer arietinum
Ca_19854
I
0.708
VIT_00s0211g00150
Vitis vinifera
VIT_00s0211g00150
I
0.708
Bo9g103660
Brassica oleracea
Bo9g103660
I
0.708
TRIUR3_18402
Triticum urartu
TRIUR3_18402
I
0.708
OGLUM02G31980
Oryza glumaepatula
OGLUM02G31980
I
0.708
VIT_00s0211g00180
Vitis vinifera
VIT_00s0211g00180
I
0.708
VIT_03s0097g00160
Vitis vinifera
VIT_03s0097g00160
I
0.708
Ca_14956
Cicer arietinum
Ca_14956
I
0.708
OB08G23110
Oryza brachyantha
OB08G23110
I
0.708
OBART02G31280
Oryza barthii
OBART02G31280
I
0.708
AGL18
Vitis vinifera
VIT_08s0007g08790
I
0.708
Aquca_009_00337
Aquilegia coerulea
Aquca_009_00337
I
0.708