CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_7BS_9D42F9BEA
(
Triticum aestivum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Traes_7BS_9D42F9BEA
T256615_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.759
0.759
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.759
0.759
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.724
0.724
MAD55_ORYSJ
M10962_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS55_01
0.724
0.724
Q4U0F1_WHEAT
M10978_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT2_01
0.724
0.724
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_7BS_9D42F9BEA.2
MADS box
1
29
MKKARELAILCDADLALIVFSSTGRLYDF
Links
Other
MADS box
family TFs
Other
Triticum aestivum
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_7DS_59CBF5647
Triticum aestivum
Traes_7DS_59CBF5647
I
1.000
F775_25533
Aegilops tauschii
F775_25533
I
1.000
Traes_7DS_D9008CC09
Triticum aestivum
Traes_7DS_D9008CC09
I
1.000
TRIUR3_09267
Triticum urartu
TRIUR3_09267
I
1.000
MLOC_4407
Hordeum vulgare
MLOC_4407
I
1.000
TRIUR3_17292
Triticum urartu
TRIUR3_17292
I
1.000
Traes_7BS_DC9822CEF
Triticum aestivum
Traes_7BS_DC9822CEF
I
1.000
Traes_7DS_05F0F0B64
Triticum aestivum
Traes_7DS_05F0F0B64
I
1.000
Traes_5AS_029A65B0A
Triticum aestivum
Traes_5AS_029A65B0A
I
1.000
Traes_5DS_3EBE121C7
Triticum aestivum
Traes_5DS_3EBE121C7
I
1.000
Traes_7AS_360247894
Triticum aestivum
Traes_7AS_360247894
I
1.000
Traes_7AS_376CD50EA
Triticum aestivum
Traes_7AS_376CD50EA
I
1.000
Traes_7AS_8123257BA
Triticum aestivum
Traes_7AS_8123257BA
I
0.966
TRIUR3_09108
Triticum urartu
TRIUR3_09108
I
0.966
Traes_5DS_B288EE729
Triticum aestivum
Traes_5DS_B288EE729
I
0.897
LPERR04G04720
Leersia perrieri
LPERR04G04720
I
0.862
Si003917m.g
Setaria italica
Si003917m.g
I
0.862
OB04G15510
Oryza brachyantha
OB04G15510
I
0.862
OPUNC04G05760
Oryza punctata
OPUNC04G05760
I
0.862
mgf021543m
Mimulus guttatus
mgf021543m
I
0.828
Pavir.Fb01587
Panicum virgatum
Pavir.Fb01587
I
0.828
Pavir.Ea01057
Panicum virgatum
Pavir.Ea01057
I
0.828
OLONG_011763
Oryza longistaminata
OLONG_011763
I
0.793
OMERI01G36640
Oryza meridionalis
OMERI01G36640
I
0.793
OMERI08G12880
Oryza meridionalis
OMERI08G12880
I
0.793
ONIVA01G44610
Oryza nivara
ONIVA01G44610
I
0.793
OLONG_003033
Oryza longistaminata
OLONG_003033
I
0.793
OGLUM01G43970
Oryza glumaepatula
OGLUM01G43970
I
0.793
OBART01G39740
Oryza barthii
OBART01G39740
I
0.793
Pavir.Cb00838
Panicum virgatum
Pavir.Cb00838
I
0.793
OBART08G15610
Oryza barthii
OBART08G15610
I
0.793
ONIVA08G16700
Oryza nivara
ONIVA08G16700
I
0.793
OB08G23110
Oryza brachyantha
OB08G23110
I
0.793
Bo8g091790
Brassica oleracea
Bo8g091790
I
0.793
BGIOSGA026939
Oryza indica
BGIOSGA026939
I
0.793
BGIOSGA004940
Oryza indica
BGIOSGA004940
I
0.793
Sb07g021110
Sorghum bicolor
Sb07g021110
I
0.793
Si014885m.g
Setaria italica
Si014885m.g
I
0.793
MADS21
Oryza sativa
OS01G0886200
I
0.793
ORUFI01G43090
Oryza rufipogon
ORUFI01G43090
I
0.793
Bra007324
Brassica rapa
Bra007324
I
0.793
OPUNC08G13690
Oryza punctata
OPUNC08G13690
I
0.793
ORGLA01G0336500
Oryza glaberrima
ORGLA01G0336500
I
0.793
ORGLA08G0137000
Oryza glaberrima
ORGLA08G0137000
I
0.793
OPUNC01G38480
Oryza punctata
OPUNC01G38480
I
0.793
OGLUM08G16360
Oryza glumaepatula
OGLUM08G16360
I
0.793
GSMUA_Achr10G30040_001
Musa acuminata
GSMUA_Achr10G30040_001
I
0.793
Lus10015766.g
Linum usitatissimum
Lus10015766.g
I
0.793
GRMZM2G137510
Zea mays
GRMZM2G137510
I
0.759
GLYMA05G28130
Glycine max
GLYMA05G28130
I
0.759
Lus10042918.g
Linum usitatissimum
Lus10042918.g
I
0.759
Eucgr.H04618
Eucalyptus grandis
Eucgr.H04618
I
0.759
Lus10037039.g
Linum usitatissimum
Lus10037039.g
I
0.759
GRMZM2G052045
Zea mays
GRMZM2G052045
I
0.759
GRMZM2G044408
Zea mays
GRMZM2G044408
I
0.759
MADS23
Oryza sativa
OS08G0431900
I
0.759
VIT_14s0068g01800
Vitis vinifera
VIT_14s0068g01800
I
0.759
Gorai.008G092300
Gossypium raimondii
Gorai.008G092300
I
0.759
Bra014628
Brassica rapa
Bra014628
I
0.759
BRADI3G57017
Brachypodium distachyon
BRADI3G57017
I
0.759
Bra019018
Brassica rapa
Bra019018
N
0.759
Thhalv10026116m.g
Eutrema salsugineum
Thhalv10026116m.g
I
0.759
Bra003278
Brassica rapa
Bra003278
I
0.759
LPERR08G12860
Leersia perrieri
LPERR08G12860
I
0.759
GLYMA08G07001
Glycine max
GLYMA08G07001
I
0.759
GSMUA_Achr9G15540_001
Musa acuminata
GSMUA_Achr9G15540_001
I
0.759
MDP0000475549
Malus domestica
MDP0000475549
I
0.759
AMTR_s00109p00015260
Amborella trichopoda
AMTR_s00109p00015260
I
0.759
Bo4g111230
Brassica oleracea
Bo4g111230
I
0.759
Bo7g116760
Brassica oleracea
Bo7g116760
I
0.759
Bo6g072840
Brassica oleracea
Bo6g072840
I
0.759
Bra017638
Brassica rapa
Bra017638
I
0.759
MDP0000228942
Malus domestica
MDP0000228942
I
0.724
TRIUR3_03219
Triticum urartu
TRIUR3_03219
I
0.724
Pavir.Ga01454
Panicum virgatum
Pavir.Ga01454
I
0.724
Traes_6AL_A93C6F2FC
Triticum aestivum
Traes_6AL_A93C6F2FC
I
0.724
PK11571.1
Cannabis sativa
PK11571.1
I
0.724
Solyc02g091550.1
Solanum lycopersicum
Solyc02g091550.1
I
0.724
Traes_6DL_D8C9E421C
Triticum aestivum
Traes_6DL_D8C9E421C
I
0.724
Pavir.J13837
Panicum virgatum
Pavir.J13837
I
0.724
MDP0000268317
Malus domestica
MDP0000268317
I
0.724
Pavir.Gb01527
Panicum virgatum
Pavir.Gb01527
I
0.724
Pavir.Ab02921
Panicum virgatum
Pavir.Ab02921
I
0.724
VIT_00s0211g00180
Vitis vinifera
VIT_00s0211g00180
I
0.724
Carubv10006544m.g
Capsella rubella
Carubv10006544m.g
I
0.724
Cucsa.331900
Cucumis sativus
Cucsa.331900
I
0.724
Carubv10017886m.g
Capsella rubella
Carubv10017886m.g
I
0.724
estExt_fgenesh1_kg.C_260002
Physcomitrella patens
estExt_fgenesh1_kg.C_260002
I
0.724
Cagra.0578s0070
Capsella grandiflora
Cagra.0578s0070
I
0.724
mgf022278m
Mimulus guttatus
mgf022278m
I
0.724
Bostr.25542s0226
Boechera stricta
Bostr.25542s0226
I
0.724
Solyc01g106170.2
Solanum lycopersicum
Solyc01g106170.2
I
0.724
Eucgr.F02141
Eucalyptus grandis
Eucgr.F02141
I
0.724
cassava4651.m1
Manihot esculenta
cassava4651.m1
I
0.724
Aquca_010_00060
Aquilegia coerulea
Aquca_010_00060
I
0.724
VIT_00s0211g00150
Vitis vinifera
VIT_00s0211g00150
I
0.724
TRIUR3_09266
Triticum urartu
TRIUR3_09266
I
0.724
Lus10028214.g
Linum usitatissimum
Lus10028214.g
I
0.724
Ca_14956
Cicer arietinum
Ca_14956
I
0.724
gene25618-v1.0-hybrid
Fragaria vesca
gene25618-v1.0-hybrid
I
0.724
cassava39185.m1
Manihot esculenta
cassava39185.m1
I
0.724
Pm021962
Prunus mume
Pm021962
I
0.724
Pavir.Da01333
Panicum virgatum
Pavir.Da01333
I
0.724
ORGLA06G0069900
Oryza glaberrima
ORGLA06G0069900
I
0.724
GRMZM2G046885
Zea mays
GRMZM2G046885
I
0.724
GRMZM2G370777
Zea mays
GRMZM2G370777
I
0.724
GRMZM2G032905
Zea mays
GRMZM2G032905
I
0.724
GLYMA15G06470
Glycine max
GLYMA15G06470
I
0.724
GLYMA13G32810
Glycine max
GLYMA13G32810
I
0.724
GRMZM5G814279
Zea mays
GRMZM5G814279
I
0.724
GSMUA_Achr10G19290_001
Musa acuminata
GSMUA_Achr10G19290_001
I
0.724
GSMUA_Achr3G07310_001
Musa acuminata
GSMUA_Achr3G07310_001
I
0.724
GSMUA_Achr9G15180_001
Musa acuminata
GSMUA_Achr9G15180_001
I
0.724
GSMUA_Achr3G06800_001
Musa acuminata
GSMUA_Achr3G06800_001
I
0.724
GSMUA_Achr2G06250_001
Musa acuminata
GSMUA_Achr2G06250_001
I
0.724
GSMUA_Achr10G21480_001
Musa acuminata
GSMUA_Achr10G21480_001
I
0.724
GLYMA08G11110
Glycine max
GLYMA08G11110
I
0.724
AGL17
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4000157
I
0.724
BGIOSGA008983
Oryza indica
BGIOSGA008983
I
0.724
BGIOSGA021662
Oryza indica
BGIOSGA021662
I
0.724
AGL18
Arabidopsis thaliana
AT3G57390
I
0.724
AMTR_s00046p00208680
Amborella trichopoda
AMTR_s00046p00208680
I
0.724
AMTR_s00013p00114420
Amborella trichopoda
AMTR_s00013p00114420
I
0.724
BGIOSGA022872
Oryza indica
BGIOSGA022872
I
0.724
Bo1g007520
Brassica oleracea
Bo1g007520
I
0.724
Bra030228
Brassica rapa
Bra030228
I
0.724
BRADI1G45807
Brachypodium distachyon
BRADI1G45807
I
0.724
Bra011509
Brassica rapa
Bra011509
I
0.724
Bra000392
Brassica rapa
Bra000392
I
0.724
Bo4g149800
Brassica oleracea
Bo4g149800
I
0.724
LPERR01G34270
Leersia perrieri
LPERR01G34270
I
0.724
MAD55_ORYSJ
Oryza sativa
MAD55_ORYSJ
D
0.724
PRUPE_ppa024736mg
Prunus persica
PRUPE_ppa024736mg
I
0.724
Q4U0F1_WHEAT
Triticum aestivum
Q4U0F1_WHEAT
D
0.724
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.724
OS06G0347700
Oryza sativa
OS06G0347700
I
0.724
OS06G0217300
Oryza sativa
OS06G0217300
I
0.724
Sb04g028960
Sorghum bicolor
Sb04g028960
I
0.724
Sb04g033930
Sorghum bicolor
Sb04g033930
I
0.724
Si017524m.g
Setaria italica
Si017524m.g
I
0.724
Si019880m.g
Setaria italica
Si019880m.g
I
0.724
Si015525m.g
Setaria italica
Si015525m.g
I
0.724
Si012517m.g
Setaria italica
Si012517m.g
I
0.724
Si007641m.g
Setaria italica
Si007641m.g
I
0.724
ORUFI06G14980
Oryza rufipogon
ORUFI06G14980
I
0.724
ORGLA12G0056500
Oryza glaberrima
ORGLA12G0056500
I
0.724
OLONG_018231
Oryza longistaminata
OLONG_018231
I
0.724
OMERI06G08590
Oryza meridionalis
OMERI06G08590
I
0.724
OGLUM06G15040
Oryza glumaepatula
OGLUM06G15040
I
0.724
OBART06G14060
Oryza barthii
OBART06G14060
I
0.724
OB06G16920
Oryza brachyantha
OB06G16920
I
0.724
OMERI06G15180
Oryza meridionalis
OMERI06G15180
I
0.724
ONIVA06G16870
Oryza nivara
ONIVA06G16870
I
0.724
A1YJE4_HORVD
Hordeum vulgare
A1YJE4_HORVD
D
0.724
ORGLA06G0125600
Oryza glaberrima
ORGLA06G0125600
I
0.724
ORGLA02G0288600
Oryza glaberrima
ORGLA02G0288600
I
0.724
OPUNC06G13170
Oryza punctata
OPUNC06G13170
I
0.724
OPUNC06G07080
Oryza punctata
OPUNC06G07080
I
0.724
Si025315m.g
Setaria italica
Si025315m.g
I
0.724