AP3 (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_18s0001g13460 T256818_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.896 0.896
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.854 0.854
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.854 0.854
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.854 0.854
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.812 0.812
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.792 0.792
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.771 0.771
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.729 0.729
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708 0.708
Q9FVN1_MAIZE
M10982_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_18s0001g13460.t01 MADS box 10 57

Links

Other MADS box family TFs
Other Vitis vinifera TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla021117 Citrullus lanatus Cla021117 I 0.917
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.917
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.917
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.917
Ca_04909 Cicer arietinum Ca_04909 I 0.917
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.917
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.917
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.896
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.896
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.896
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.896
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.896
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.875
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.875
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.875
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.875
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.875
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.875
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.875
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.875
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.875
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.875
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.875
mgf015533m Mimulus guttatus mgf015533m I 0.875
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.875
Pm026712 Prunus mume Pm026712 I 0.872
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.854
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.854
MDP0000133037 Malus domestica MDP0000133037 I 0.854
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.854
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.854
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.854
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.854
MDP0000184294 Malus domestica MDP0000184294 I 0.854
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.854
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.854
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.854
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.854
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.854
AP3 Arabidopsis thaliana AT3G54340 D 0.854
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.854
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.854
MDP0000224779 Malus domestica MDP0000224779 I 0.854
MDP0000315938 Malus domestica MDP0000315938 I 0.854
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.833
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.833
Bra014822 Brassica rapa Bra014822 I 0.833
Bra007067 Brassica rapa Bra007067 I 0.833
Bo4g120010 Brassica oleracea Bo4g120010 I 0.833
Bo8g083600 Brassica oleracea Bo8g083600 I 0.833
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.833
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.833
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.833
TCM_034148 Theobroma cacao TCM_034148 I 0.833
Pm006266 Prunus mume Pm006266 I 0.833
TCM_000266 Theobroma cacao TCM_000266 I 0.833
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.833
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.833
MADS16 Oryza sativa OS06G0712700 D 0.812
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.812
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.812
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.812
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.812
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.812
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.812
29782.m000119 Ricinus communis 29782.m000119 I 0.812
Si007221m.g Setaria italica Si007221m.g I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.812
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.812
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.812
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.812
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.812
OB06G35020 Oryza brachyantha OB06G35020 I 0.812
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.812
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.812
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.812
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.812
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.812
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.812
OBART06G27230 Oryza barthii OBART06G27230 I 0.812
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.812
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.812
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.812
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.812
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.812
mgf000046m Mimulus guttatus mgf000046m I 0.809
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.792
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.792
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.792
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.792
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.792
Ca_01994 Cicer arietinum Ca_01994 I 0.792
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.792
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.792
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.792
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.792
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.792
TCM_035212 Theobroma cacao TCM_035212 I 0.771
29648.m001978 Ricinus communis 29648.m001978 I 0.771
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.771
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.771
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.771
AP3 Populus trichocarpa POPTR_0002s02990 I 0.771
F775_30609 Aegilops tauschii F775_30609 I 0.759
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.750
PI Vitis vinifera VIT_18s0001g01760 I 0.750
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.750
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.750
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.750
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.750
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.750
Pm004718 Prunus mume Pm004718 I 0.750
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.750
Cla023547 Citrullus lanatus Cla023547 I 0.750
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.750
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.750
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.750
mgf003143m Mimulus guttatus mgf003143m I 0.729
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.729
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.729
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.729
mgf006158m Mimulus guttatus mgf006158m I 0.729
mgf008207m Mimulus guttatus mgf008207m I 0.729
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.729
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.729
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.729
TT16 Vitis vinifera VIT_01s0011g01560 I 0.729
Ca_13111 Cicer arietinum Ca_13111 I 0.729
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
GRMZM2G316366 Zea mays GRMZM2G316366 I 0.708
OB05G24910 Oryza brachyantha OB05G24910 I 0.708
OB04G22330 Oryza brachyantha OB04G22330 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.708
OB02G29310 Oryza brachyantha OB02G29310 I 0.708
OBART02G21870 Oryza barthii OBART02G21870 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
LPERR02G17700 Leersia perrieri LPERR02G17700 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
SapurV1A.2206s0010 Salix purpurea SapurV1A.2206s0010 I 0.708
BRADI5G12440 Brachypodium distachyon BRADI5G12440 I 0.708
F775_27066 Aegilops tauschii F775_27066 I 0.708
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.708
BRADI3G46920 Brachypodium distachyon BRADI3G46920 I 0.708
BGIOSGA008494 Oryza indica BGIOSGA008494 I 0.708
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.708
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.708
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.708
SapurV1A.0383s0080 Salix purpurea SapurV1A.0383s0080 I 0.708
GLYMA04G43640 Glycine max GLYMA04G43640 I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.708
OBART04G15020 Oryza barthii OBART04G15020 I 0.708
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.708
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
orange1.1g036452m.g Citrus sinensis orange1.1g036452m.g I 0.708
ONIVA04G13150 Oryza nivara ONIVA04G13150 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
Sb04g024010 Sorghum bicolor Sb04g024010 I 0.708
Sb06g019040 Sorghum bicolor Sb06g019040 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
Si019337m.g Setaria italica Si019337m.g I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
Traes_2DL_662837152 Triticum aestivum Traes_2DL_662837152 I 0.708
Ca_03887 Cicer arietinum Ca_03887 I 0.708
TRIUR3_19891 Triticum urartu TRIUR3_19891 I 0.708
Traes_2BL_3E613DE21 Triticum aestivum Traes_2BL_3E613DE21 I 0.708
Traes_2AL_267502097 Triticum aestivum Traes_2AL_267502097 I 0.708
Solyc07g055920.2 Solanum lycopersicum Solyc07g055920.2 I 0.708
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
ORGLA04G0120000 Oryza glaberrima ORGLA04G0120000 I 0.708
ORUFI02G22950 Oryza rufipogon ORUFI02G22950 I 0.708
ORUFI04G16410 Oryza rufipogon ORUFI04G16410 I 0.708
OPUNC02G19600 Oryza punctata OPUNC02G19600 I 0.708
ONIVA02G24100 Oryza nivara ONIVA02G24100 I 0.708
OLONG_016283 Oryza longistaminata OLONG_016283 I 0.708
OLONG_024179 Oryza longistaminata OLONG_024179 I 0.708
OMERI02G21410 Oryza meridionalis OMERI02G21410 I 0.708
MADS27 Oryza sativa OS02G0579600 I 0.708
OS04G0461300 Oryza sativa OS04G0461300 I 0.708
POPTR_0013s09960 Populus trichocarpa POPTR_0013s09960 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
Q9FVN1_MAIZE Zea mays Q9FVN1_MAIZE D 0.708
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.708
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.708
PGSC0003DMG400017295 Solanum tuberosum PGSC0003DMG400017295 I 0.708
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.708
OGLUM02G22050 Oryza glumaepatula OGLUM02G22050 I 0.708