YQE_03076 (Dendroctonus ponderosae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 YQE_03076 T256843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.840 0.840
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.840 0.840
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.840 0.840
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.800 0.800
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.800 0.800
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.800 0.800
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.800 0.800
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.800 0.800
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.800 0.800
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.800 0.800
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.800 0.800
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.800 0.800
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.800 0.800
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.800 0.800
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.800 0.800
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.800 0.800
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.800 0.800
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.800 0.800
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.800 0.800
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.800 0.800
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.800 0.800
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.800 0.800
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.800 0.800
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.800 0.800
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN80504 MADS box 118 142

Links

Other MADS box family TFs
Other Dendroctonus ponderosae TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CpipJ_CPIJ012997 Culex pipiens CpipJ_CPIJ012997 N 0.000
LCUP010123 Lucilia cuprina LCUP010123 N 0.000
LDEC001996 Leptinotarsa decemlineata LDEC001996 N 0.000
AALB002132 Anopheles albimanus AALB002132 N 0.000
AARA006416 Anopheles arabiensis AARA006416 N 0.000
AATE004455 Anopheles atroparvus AATE004455 N 0.000
ACHR002542 Anopheles christyi ACHR002542 N 0.000
ACOM029624 Anopheles coluzzii ACOM029624 N 0.000
ACUA022751 Anopheles culicifacies ACUA022751 N 0.000
ADIR006726 Anopheles dirus ADIR006726 N 0.000
AEPI008759 Anopheles epiroticus AEPI008759 N 0.000
AFAF006670 Anopheles farauti AFAF006670 N 0.000
AFUN004467 Anopheles funestus AFUN004467 N 0.000
AMEM016490 Anopheles merus AMEM016490 N 0.000
AMIN004869 Anopheles minimus AMIN004869 N 0.000
AQUA009670 Anopheles quadriannulatus AQUA009670 N 0.000
HHAL003515-PA Halyomorpha halys HHAL003515-PA N 0.000
CLEC012958 Cimex lectularius CLEC012958 N 0.000
Cflo_05310--NP_001011629.1_APIME Camponotus floridanus Cflo_05310--NP_001011629.1_APIME N 0.000
ACYPI002959 Acyrthosiphon pisum ACYPI002959 N 0.000
AGAP004494 Anopheles gambiae AGAP004494 N 0.000
BGIBMGA010815 Bombyx mori BGIBMGA010815 N 0.000
CPIJ012997 Culex quinquefasciatus CPIJ012997 N 0.000
GK14236 Drosophila willistoni FBgn0216242 N 0.000
GB50048 Apis mellifera GB50048 N 0.000
HMEL013143 Heliconius melpomene HMEL013143 N 0.000
ISCW019047 Ixodes scapularis ISCW019047 N 0.000
KGM_00875 Danaus plexippus KGM_00875 N 0.000
L798_02049 Zootermopsis nevadensis L798_02049 N 0.000
PHUM461050 Pediculus humanus PHUM461050 N 0.000
RPRC010858 Rhodnius prolixus RPRC010858 N 0.000
SMAR000814 Strigamia maritima SMAR000814 N 0.000
TC012464 Tribolium castaneum TC012464 N 0.000
YQE_12847 Dendroctonus ponderosae YQE_12847 N 0.000
PPAI001250 Phlebotomus papatasi PPAI001250 N 0.000