CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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EDI_092490
(
Entamoeba dispar
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
EDI_092490
T256860_2.00
EuPathDB (2015-Mar-30)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MEF2A
M03340_2.00
Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM
SELEX
Jolma et al.(2013)
MEF2A_1
0.708
0.708
MEF2D
M03343_2.00
Homo sapiens
DCTAWAAATAGM
KCTATTTWTAGH
SELEX
Jolma et al.(2013)
MEF2D_1
0.708
0.708
MEF2C
M02745_2.00
Homo sapiens
TWCTAWAAATAG
CTATTTWTAGWA
SELEX
Jolma et al.(2010)
MEF2C_dimer
0.708
0.708
MEF2C
M05551_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX
0.708
0.708
MEF2D
M05555_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX
0.708
0.708
MEF2C
M08149_2.00
Homo sapiens
NDDMYAAAAATAGMH
DKCTATTTTTRKHHN
ChIP-seq
Mathelier et al.(2014)
MA0497.1
0.708
0.708
MEF2A
M07979_2.00
Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha
0.708
0.708
MEF2C
M07980_2.00
Homo sapiens
NDDYYAAAAATAGHH
DDCTATTTTTRRHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha
0.708
0.708
MEF2A
M08212_2.00
Homo sapiens
CTAWWWWTAG
CTAWWWWTAG
ChIP-seq
Contrino et al.(2012)
Mv88
0.708
0.708
MEF2A
M08213_2.00
Homo sapiens
AAAATAGM
KCTATTTT
ChIP-seq
Contrino et al.(2012)
Mv90
0.708
0.708
MEF2A
M09247_2.00
Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A
0.708
0.708
MEF2C
M09248_2.00
Homo sapiens
DYYAAAAATARMH
DKYTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A
0.708
0.708
MEF2D
M09250_2.00
Homo sapiens
CTAWAAATAGMH
DKCTATTTWTAG
Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A
0.708
0.708
Mef2a
M09255_2.00
Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH
Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A
0.708
0.708
Mef2c
M09253_2.00
Mus musculus
DDMYAAAAATAGMHN
NDKCTATTTTTRKHH
Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A
0.708
0.708
Mef2d
M09252_2.00
Mus musculus
DDCTAWAAATAGMH
DKCTATTTWTAGHH
Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A
0.708
0.708
MEF2C
M09597_2.00
Homo sapiens
DHYWDAAATARM
KYTATTTHWRDH
Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465
0.708
0.708
Mef2a
M09599_2.00
Mus musculus
CYNDAAATAG
CTATTTHNRG
Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529
0.708
0.708
MEF2A
M10933_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AMEF2_Q6
0.708
0.708
MEF2A
M10934_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMEF2_Q6
0.708
0.708
MEF2A
M10935_2.00
Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV
Transfac
Matys et al.(2006)
V$MEF2_01
0.708
0.708
MEF2A
M10936_2.00
Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV
Transfac
Matys et al.(2006)
V$MEF2_02
0.708
0.708
MEF2A
M10937_2.00
Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN
Transfac
Matys et al.(2006)
V$MEF2_03
0.708
0.708
MEF2A
M10938_2.00
Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN
Transfac
Matys et al.(2006)
V$MEF2_04
0.708
0.708
MEF2A
M10939_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_05
0.708
0.708
MEF2A
M10940_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_Q6
0.708
0.708
MEF2C
M10945_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_02
0.708
0.708
MEF2C
M10946_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_Q4
0.708
0.708
MEF2D
M10957_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2D_Q4
0.708
0.708
MEF2A
M10941_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2_Q6_02
0.708
0.708
MEF2A
M10942_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MMEF2_Q6
0.708
0.708
MEF2A
M10943_2.00
Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN
Transfac
Matys et al.(2006)
V$RSRFC4_01
0.708
0.708
MEF2A
M10944_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RSRFC4_Q2
0.708
0.708
MEF2C
M05552_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX
0.708
0.708
MEF2D
M05556_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDI_092490
MADS box
10
58
RIANDRNRQATFTKRKNGLIKKAMELSILCDCEIALICFNSTNNKIFVY
Links
Other
MADS box
family TFs
Other
Entamoeba dispar
TFs
275 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy