CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cflo_01183--XP_397383.2_APIME
(
Camponotus floridanus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cflo_01183--XP_397383.2_APIME
T256939_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Mef2
M08214_2.00
Drosophila melanogaster
YTAWWWWTAR
YTAWWWWTAR
ChIP-seq
Contrino et al.(2012)
Mf26
1.000
1.000
MEF2A
M03340_2.00
Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM
SELEX
Jolma et al.(2013)
MEF2A_1
0.931
0.931
MEF2A
M07979_2.00
Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha
0.931
0.931
MEF2A
M08212_2.00
Homo sapiens
CTAWWWWTAG
CTAWWWWTAG
ChIP-seq
Contrino et al.(2012)
Mv88
0.931
0.931
MEF2A
M08213_2.00
Homo sapiens
AAAATAGM
KCTATTTT
ChIP-seq
Contrino et al.(2012)
Mv90
0.931
0.931
MEF2A
M09247_2.00
Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A
0.931
0.931
Mef2a
M09255_2.00
Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH
Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A
0.931
0.931
Mef2a
M09599_2.00
Mus musculus
CYNDAAATAG
CTATTTHNRG
Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529
0.931
0.931
MEF2A
M10933_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AMEF2_Q6
0.931
0.931
MEF2A
M10934_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMEF2_Q6
0.931
0.931
MEF2A
M10935_2.00
Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV
Transfac
Matys et al.(2006)
V$MEF2_01
0.931
0.931
MEF2A
M10936_2.00
Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV
Transfac
Matys et al.(2006)
V$MEF2_02
0.931
0.931
MEF2A
M10937_2.00
Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN
Transfac
Matys et al.(2006)
V$MEF2_03
0.931
0.931
MEF2A
M10938_2.00
Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN
Transfac
Matys et al.(2006)
V$MEF2_04
0.931
0.931
MEF2A
M10939_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_05
0.931
0.931
MEF2A
M10940_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_Q6
0.931
0.931
MEF2A
M10941_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2_Q6_02
0.931
0.931
MEF2A
M10942_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MMEF2_Q6
0.931
0.931
MEF2A
M10943_2.00
Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN
Transfac
Matys et al.(2006)
V$RSRFC4_01
0.931
0.931
MEF2A
M10944_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RSRFC4_Q2
0.931
0.931
MEF2D
M03343_2.00
Homo sapiens
DCTAWAAATAGM
KCTATTTWTAGH
SELEX
Jolma et al.(2013)
MEF2D_1
0.897
0.897
MEF2C
M02745_2.00
Homo sapiens
TWCTAWAAATAG
CTATTTWTAGWA
SELEX
Jolma et al.(2010)
MEF2C_dimer
0.897
0.897
MEF2C
M05551_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX
0.897
0.897
MEF2D
M05555_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX
0.897
0.897
MEF2C
M08149_2.00
Homo sapiens
NDDMYAAAAATAGMH
DKCTATTTTTRKHHN
ChIP-seq
Mathelier et al.(2014)
MA0497.1
0.897
0.897
MEF2C
M07980_2.00
Homo sapiens
NDDYYAAAAATAGHH
DDCTATTTTTRRHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha
0.897
0.897
MEF2C
M09248_2.00
Homo sapiens
DYYAAAAATARMH
DKYTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A
0.897
0.897
MEF2D
M09250_2.00
Homo sapiens
CTAWAAATAGMH
DKCTATTTWTAG
Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A
0.897
0.897
Mef2c
M09253_2.00
Mus musculus
DDMYAAAAATAGMHN
NDKCTATTTTTRKHH
Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A
0.897
0.897
Mef2d
M09252_2.00
Mus musculus
DDCTAWAAATAGMH
DKCTATTTWTAGHH
Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A
0.897
0.897
MEF2C
M09597_2.00
Homo sapiens
DHYWDAAATARM
KYTATTTHWRDH
Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465
0.897
0.897
MEF2C
M10945_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_02
0.897
0.897
MEF2C
M10946_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_Q4
0.897
0.897
MEF2D
M10957_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2D_Q4
0.897
0.897
MEF2C
M05552_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX
0.897
0.897
MEF2D
M05556_2.00
Homo sapiens
CYWWATWWGG
CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX
0.897
0.897
MEF2B
M03344_2.00
Homo sapiens
RCTAWAAATAGM
KCTATTTWTAGY
SELEX
Jolma et al.(2013)
MEF2B_1
0.862
0.862
MEF2B
M05557_2.00
Homo sapiens
CYNDWWWHGG
CCDWWWHNRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX
0.862
0.862
MEF2B
M05559_2.00
Homo sapiens
CCVDWTATGGTAACA
TGTTACCATAWHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX
0.862
0.862
MEF2B
M09251_2.00
Homo sapiens
CYWAAAATAGHHHH
DDDDCTATTTTWRG
Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A
0.862
0.862
MEF2B
M05558_2.00
Homo sapiens
CYWWWWWNGG
CCNWWWWWRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX
0.862
0.862
MEF2B
M05560_2.00
Homo sapiens
CCVDATATGGTAACR
YGTTACCATATHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX
0.862
0.862
Mef2b
M10958_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2B_02
0.793
0.793
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.759
0.759
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.759
0.759
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.759
0.759
Q9ST54_MALDO
M11029_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.759
0.759
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.759
0.759
O82697_MALDO
M11020_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.759
0.759
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.759
0.759
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.759
0.759
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.759
0.759
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.724
0.724
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.724
0.724
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.724
0.724
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.724
0.724
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.724
0.724
AG
M10924_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.724
0.724
AG
M10925_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.724
0.724
AG_TOBAC
M10995_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.724
0.724
SEP1
M10929_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.724
0.724
SEP1
M10930_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.724
0.724
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.724
0.724
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.724
0.724
AGL3
M10910_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.724
0.724
SEP3
M10902_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.724
0.724
AG
M10926_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.724
0.724
AGL9_PETHY
M10993_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.724
0.724
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.724
0.724
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.724
0.724
Q08711_PETHY
M10999_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.724
0.724
O82084_MALDO
M11018_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.724
0.724
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.724
0.724
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.724
0.724
MADS3_ORYSJ
M10963_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.724
0.724
AG_PETHY
M10994_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.724
0.724
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.724
0.724
MADS7
M10975_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.724
0.724
MADS8
M10976_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.724
0.724
Q9SBA6_MALDO
M11028_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.724
0.724
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cflo_01183--XP_397383.2_APIME
MADS box
1
29
MKKAYELSVLCDCEIALIIFSSSNKLYQY
Links
Other
MADS box
family TFs
Other
Camponotus floridanus
TFs
196 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy