Cla013108 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla013108 T256965_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013108 MADS box 10 57

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.190400 Cucumis sativus Cucsa.190400 N 1.000
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.854
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.812
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.812
29838.m001690 Ricinus communis 29838.m001690 I 0.812
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.812
OB11G21480 Oryza brachyantha OB11G21480 I 0.800
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.792
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.792
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.792
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.792
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.792
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.792
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.792
TCM_007378 Theobroma cacao TCM_007378 I 0.792
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.792
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.771
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.771
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.771
Ca_01491 Cicer arietinum Ca_01491 I 0.771
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.771
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.771
OBART03G06320 Oryza barthii OBART03G06320 I 0.771
Si037358m.g Setaria italica Si037358m.g I 0.771
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.771
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.771
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.771
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.771
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.771
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.771
OS03G0186600 Oryza sativa OS03G0186600 I 0.771
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.771
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.771
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.771
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.771
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.771
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.771
mgf015964m Mimulus guttatus mgf015964m I 0.771
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.771
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.750
F775_26069 Aegilops tauschii F775_26069 I 0.750
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.750
Gorai.007G058200 Gossypium raimondii Gorai.007G058200 I 0.750
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.750
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.750
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.750
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.750
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.750
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.750
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.750
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.750
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.750
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.750
Pm022002 Prunus mume Pm022002 I 0.750
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.750
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.750
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.750
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.750
MTR_4g093970 Medicago truncatula MTR_4g093970 I 0.750
GSMUA_Achr10G30040_001 Musa acuminata GSMUA_Achr10G30040_001 I 0.729
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.729
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.729
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.729
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.729
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.729
mgf023192m Mimulus guttatus mgf023192m I 0.729
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.729
Cla014322 Citrullus lanatus Cla014322 I 0.729
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.729
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.729
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.729
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I 0.729
PK28167.1 Cannabis sativa PK28167.1 I 0.729
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
TCM_034501 Theobroma cacao TCM_034501 I 0.729
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.729
gene22696-v1.0-hybrid Fragaria vesca gene22696-v1.0-hybrid I 0.729
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.729
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.729
cassava44571.m1 Manihot esculenta cassava44571.m1 I 0.729
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.729
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.729
PK27158.1 Cannabis sativa PK27158.1 I 0.714
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.708
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
MDP0000209705 Malus domestica MDP0000209705 I 0.708
OS06G0347700 Oryza sativa OS06G0347700 I 0.708
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.708
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.708
Carubv10023996m.g Capsella rubella Carubv10023996m.g I 0.708
Carubv10006453m.g Capsella rubella Carubv10006453m.g I 0.708
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I 0.708
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I 0.708
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.708
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.708
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
MDP0000475549 Malus domestica MDP0000475549 I 0.708
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
PK11571.1 Cannabis sativa PK11571.1 I 0.708
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.708
PK27820.1 Cannabis sativa PK27820.1 I 0.708
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.708
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.708
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.708
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.708
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.708
Cagra.1080s0003 Capsella grandiflora Cagra.1080s0003 I 0.708
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.708
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.708
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.708
AGL21 Arabidopsis thaliana AT4G37940 I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.708
Bostr.25542s0226 Boechera stricta Bostr.25542s0226 I 0.708
Bra010623 Brassica rapa Bra010623 I 0.708
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.708
OBART06G14060 Oryza barthii OBART06G14060 I 0.708
Bra011797 Brassica rapa Bra011797 I 0.708
OBART08G15610 Oryza barthii OBART08G15610 I 0.708
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.708
Cla022499 Citrullus lanatus Cla022499 I 0.708
Cla014307 Citrullus lanatus Cla014307 I 0.708
Si014885m.g Setaria italica Si014885m.g I 0.708
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.708
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.708
OB08G23110 Oryza brachyantha OB08G23110 I 0.708
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.708
TCM_000992 Theobroma cacao TCM_000992 I 0.708
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.708
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I 0.708
TCM_000931 Theobroma cacao TCM_000931 I 0.708
MTR_5g031000 Medicago truncatula MTR_5g031000 I 0.708
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.708
Pm002166 Prunus mume Pm002166 I 0.708
Pm002271 Prunus mume Pm002271 I 0.708
GRMZM2G052045 Zea mays GRMZM2G052045 I 0.708
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.708
Bo1g003270 Brassica oleracea Bo1g003270 I 0.708
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.708
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
Bostr.19427s0033 Boechera stricta Bostr.19427s0033 I 0.708
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.708
Aquca_010_00060 Aquilegia coerulea Aquca_010_00060 I 0.708
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.708
Cucsa.103820 Cucumis sativus Cucsa.103820 I 0.708
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.708
Bo3g153080 Brassica oleracea Bo3g153080 I 0.708
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.708
cassava4651.m1 Manihot esculenta cassava4651.m1 I 0.708
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.708
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.708
MDP0000285581 Malus domestica MDP0000285581 I 0.702