Cla018884 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla018884 T256973_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018884 MADS box 10 57

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_13266 Aegilops tauschii F775_13266 I 0.761
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.708
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.708
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.717
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.771
Bo8g068060 Brassica oleracea Bo8g068060 I 0.771
Bra025685 Brassica rapa Bra025685 I 0.766
Bra016544 Brassica rapa Bra016544 I 0.771
Bra004393 Brassica rapa Bra004393 I 0.739
Bra031049 Brassica rapa Bra031049 I 0.771
PK03147.1 Cannabis sativa PK03147.1 I 0.739
PK21701.1 Cannabis sativa PK21701.1 I 0.812
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.708
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.717
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.717
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.708
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.717
Ca_18082 Cicer arietinum Ca_18082 I 0.739
Ca_16376 Cicer arietinum Ca_16376 I 0.761
Cla010361 Citrullus lanatus Cla010361 I 0.761
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.792
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.739
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.739
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.792
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 1.000
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.708
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.729
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.729
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.771
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.717
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.739
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.729
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.729
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.739
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.750
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.739
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.745
MDP0000193129 Malus domestica MDP0000193129 I 0.771
MDP0000147667 Malus domestica MDP0000147667 I 0.729
MDP0000773068 Malus domestica MDP0000773068 I 0.778
MDP0000919323 Malus domestica MDP0000919323 I 0.778
MDP0000146231 Malus domestica MDP0000146231 I 0.739
MDP0000146415 Malus domestica MDP0000146415 I 0.778
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.792
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.771
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.739
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.761
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.745
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.745
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.745
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.739
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.717
Pm006479 Prunus mume Pm006479 I 0.739
Pm024895 Prunus mume Pm024895 I 0.783
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.783
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.739
30138.m004061 Ricinus communis 30138.m004061 I 0.792
29813.m001508 Ricinus communis 29813.m001508 I 0.717
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.717
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.739
Si028357m.g Setaria italica Si028357m.g N 0.717
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.717
TCM_014051 Theobroma cacao TCM_014051 I 0.750
TCM_011687 Theobroma cacao TCM_011687 I 0.739
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.771