Cla019897 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla019897 T256974_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla019897 MADS box 3 50

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.979
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.854
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.854
29693.m002039 Ricinus communis 29693.m002039 I 0.833
TCM_029518 Theobroma cacao TCM_029518 I 0.833
Pm030655 Prunus mume Pm030655 I 0.812
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.812
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.812
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.812
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.812
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.792
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.792
MDP0000274606 Malus domestica MDP0000274606 N 0.792
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.771
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.771
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.771
Ca_05023 Cicer arietinum Ca_05023 I 0.750
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.750
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.750
MDP0000120467 Malus domestica MDP0000120467 N 0.750
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.750
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.750
Gorai.009G358500 Gossypium raimondii Gorai.009G358500 I 0.737
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.729
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.729
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.729
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.729
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.729
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.729
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.729
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.729
AGL29 Arabidopsis thaliana AT2G34440 I 0.729
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.729
MTR_8g046350 Medicago truncatula MTR_8g046350 N 0.729
Ca_24185 Cicer arietinum Ca_24185 I 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
GLYMA08G38880 Glycine max GLYMA08G38880 I 0.708
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.708
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.708
Bo4g182590 Brassica oleracea Bo4g182590 I 0.708
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.708
Bra021910 Brassica rapa Bra021910 I 0.708
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.708
Lus10011787.g Linum usitatissimum Lus10011787.g N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.708
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.708
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.708
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.708
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.708
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.700