Cla023547 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla023547 T256981_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.917 0.917
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.896 0.896
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.875 0.875
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR

YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.750 0.750
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.729 0.729
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.729 0.729
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708 0.708
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.708 0.708
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.708 0.708
MADS2
M10966_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla023547 MADS box 10 57

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.018420 Cucumis sativus Cucsa.018420 I 1.000
cassava32003.m1 Manihot esculenta cassava32003.m1 I 1.000
29648.m001978 Ricinus communis 29648.m001978 I 0.958
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.958
PI Vitis vinifera VIT_18s0001g01760 I 0.958
Pm004718 Prunus mume Pm004718 I 0.958
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.958
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.938
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.938
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.938
TCM_035212 Theobroma cacao TCM_035212 I 0.938
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.938
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.917
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.917
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.896
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.896
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.896
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.896
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.896
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.896
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.896
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.875
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.875
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.875
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.875
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.875
mgf008207m Mimulus guttatus mgf008207m I 0.875
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.875
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.875
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.875
mgf003143m Mimulus guttatus mgf003143m I 0.875
Ca_13111 Cicer arietinum Ca_13111 I 0.875
mgf006158m Mimulus guttatus mgf006158m I 0.875
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.875
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.854
Ca_03887 Cicer arietinum Ca_03887 I 0.854
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.854
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.854
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.833
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.812
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.792
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.750
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.750
PI Arabidopsis thaliana AT5G20240 D 0.750
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.750
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.750
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.750
Bo3g010390 Brassica oleracea Bo3g010390 I 0.750
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.750
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.750
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.750
TCM_000266 Theobroma cacao TCM_000266 I 0.750
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.750
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.750
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.750
AP3 Vitis vinifera VIT_18s0001g13460 I 0.750
Pm006266 Prunus mume Pm006266 I 0.750
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.750
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.750
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.729
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.729
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.729
Bo2g020730 Brassica oleracea Bo2g020730 I 0.729
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.729
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.729
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.729
Bo3g014100 Brassica oleracea Bo3g014100 I 0.729
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.729
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.729
Bra006549 Brassica rapa Bra006549 I 0.729
AP3 Arabidopsis thaliana AT3G54340 D 0.729
Bra002285 Brassica rapa Bra002285 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.729
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.729
Bra020093 Brassica rapa Bra020093 I 0.729
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.729
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.729
Cla021117 Citrullus lanatus Cla021117 I 0.729
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.729
Bo9g152080 Brassica oleracea Bo9g152080 I 0.729
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.729
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.729
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.729
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.729
Ca_04909 Cicer arietinum Ca_04909 I 0.729
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.729
Pm026712 Prunus mume Pm026712 I 0.723
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.708
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.708
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.708
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.708
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.708
MDP0000133037 Malus domestica MDP0000133037 I 0.708
MDP0000224779 Malus domestica MDP0000224779 I 0.708
MDP0000184294 Malus domestica MDP0000184294 I 0.708
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.708
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.708
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.708
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.708
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.708
MDP0000315938 Malus domestica MDP0000315938 I 0.708
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.708
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.708
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.708
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.708
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.708
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.708
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.708
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.708
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.708
OBART01G39540 Oryza barthii OBART01G39540 I 0.708
OBART05G17040 Oryza barthii OBART05G17040 I 0.708
OB06G35020 Oryza brachyantha OB06G35020 I 0.708
OB05G24910 Oryza brachyantha OB05G24910 I 0.708
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.708
OB01G48280 Oryza brachyantha OB01G48280 I 0.708
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.708
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.708
Bo4g120010 Brassica oleracea Bo4g120010 I 0.708
Bo7g098190 Brassica oleracea Bo7g098190 I 0.708
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.708
BGIOSGA019900 Oryza indica BGIOSGA019900 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.708
Bo8g083600 Brassica oleracea Bo8g083600 I 0.708
Bra007067 Brassica rapa Bra007067 I 0.708
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.708
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.708
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.708
Bra012997 Brassica rapa Bra012997 I 0.708
Bra014822 Brassica rapa Bra014822 I 0.708
OBART06G27230 Oryza barthii OBART06G27230 I 0.708
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.708
MADS16 Oryza sativa OS06G0712700 D 0.708
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.708
MADS4 Oryza sativa OS05G0423400 I 0.708
MADS2 Oryza sativa OS01G0883100 D 0.708
ORUFI05G18270 Oryza rufipogon ORUFI05G18270 I 0.708
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
Sb09g020770 Sorghum bicolor Sb09g020770 I 0.708
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.708
Ca_01994 Cicer arietinum Ca_01994 I 0.708
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.708
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.708
Si002929m.g Setaria italica Si002929m.g I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.708
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.708
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.708
OMERI05G14780 Oryza meridionalis OMERI05G14780 I 0.708
OLONG_005253 Oryza longistaminata OLONG_005253 I 0.708
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.708
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.708
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.708
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.708
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.708
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.708
ORGLA05G0147400 Oryza glaberrima ORGLA05G0147400 I 0.708
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.708
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.708
ONIVA05G17790 Oryza nivara ONIVA05G17790 I 0.708
29782.m000119 Ricinus communis 29782.m000119 I 0.708