TF Information

Pm004239 *(Prunus mume)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00319 (SRF-TF)	IPR002100	Pm004239	T257030_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AGL12 M10906_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL12_01	0.851	0.851
MADS26 M10974_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS26_01	0.830	0.830
FBP24_PETHY M10997_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP24_01	0.766	0.766
SVP M06984_2.00	Arabidopsis thaliana	DDCCVAAWANGGHAA	TTDCCNTWTTBGGHH	Dap-seq OMalley et al.(2016) SVP_colamp_v3b	0.723	0.723
SVP M06985_2.00	Arabidopsis thaliana	CCMAAWANGGWAANW	WNTTWCCNTWTTKGG	Dap-seq OMalley et al.(2016) SVP_col_v3b	0.723	0.723
AGL3 M02693_2.00	Arabidopsis thaliana	VDWNCCAWWWWWRGNWNN	NNWNCYWWWWWTGGNWHB	SELEX Mathelier et al.(2014) MA0001.2	0.723	0.723
SVP M08424_2.00	Arabidopsis thaliana	NWWHCCMAAAADGGAAARHH	DDYTTTCCHTTTTKGGDWWN	ChIP-chip Mathelier et al.(2014) MA0555.1	0.723	0.723
AGL3 M10908_2.00	Arabidopsis thaliana	VDWNCCAWWWWWRGNWNN	NNWNCYWWWWWTGGNWHB	Transfac Matys et al.(2006) P$AGL3_01	0.723	0.723
AGL3 M10909_2.00	Arabidopsis thaliana	NDTNCCAWWWWTRGHWNN	NNWDCYAWWWWTGGNAHN	Transfac Matys et al.(2006) P$AGL3_02	0.723	0.723
AGL3 M10910_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL3_03	0.723	0.723
O82699_MALDO M11022_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_01	0.723	0.723
AGL6 M06986_2.00	Arabidopsis thaliana	TTWCCHAAAAWRGWAANWW	WWNTTWCYWTTTTDGGWAA	Dap-seq OMalley et al.(2016) AGL6_col_a	0.702	0.702
Q9ATE8_PETHY M11011_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP21_01	0.702	0.702
Q9ATF1_PETHY M11013_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP9_01	0.702	0.702
M17_MAIZE M10959_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$M17_01	0.702	0.702
Q40591_TOBAC M11002_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_03	0.702	0.702
MAD17_ORYSJ M10961_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS17_01	0.702	0.702
Q9ST54_MALDO M11029_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_04	0.702	0.702
Q9LM09_TOBAC M11016_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS4_01	0.702	0.702
MADS6 M10967_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS6_01	0.702	0.702
O82697_MALDO M11020_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS7_01	0.702	0.702
Solyc05g012020.2 M10986_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_01	0.702	0.702
Solyc05g012020.2 M10987_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_Q2_01	0.702	0.702
Solyc05g012020.2 M10988_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_Q2	0.702	0.702
For this family, TFs with SR scores > 0.700* will likely have a similar motif*