CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm004416
(
Prunus mume
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pm004416
T257034_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.750
0.750
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.750
0.750
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm004416
MADS box
9
56
KIDYLPARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATGKLFDY
Links
Other
MADS box
family TFs
Other
Prunus mume
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy