Pm004718 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm004718 T257039_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.938 0.938
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.917 0.917
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.854 0.854
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR

YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.771 0.771
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.708 0.708
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.708 0.708
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.708 0.708
MADS2
M10966_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.708 0.708
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm004718 MADS box 10 57

Links

Other MADS box family TFs
Other Prunus mume TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 1.000
Cla023547 Citrullus lanatus Cla023547 I 0.958
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.958
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.958
PI Vitis vinifera VIT_18s0001g01760 I 0.938
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.938
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.938
29648.m001978 Ricinus communis 29648.m001978 I 0.938
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.938
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.917
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.917
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.917
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.917
TCM_035212 Theobroma cacao TCM_035212 I 0.917
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.896
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.896
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.896
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.896
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.896
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.875
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.875
Ca_13111 Cicer arietinum Ca_13111 I 0.875
mgf006158m Mimulus guttatus mgf006158m I 0.854
mgf003143m Mimulus guttatus mgf003143m I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
mgf008207m Mimulus guttatus mgf008207m I 0.854
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.854
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.854
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.854
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.854
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.854
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.854
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.833
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.833
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.833
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.833
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.833
Ca_03887 Cicer arietinum Ca_03887 I 0.812
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.812
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.792
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.792
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.792
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.792
PI Arabidopsis thaliana AT5G20240 D 0.771
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.771
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.771
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.771
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
Bo3g010390 Brassica oleracea Bo3g010390 I 0.771
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.771
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
Bo2g020730 Brassica oleracea Bo2g020730 I 0.750
Bo9g152080 Brassica oleracea Bo9g152080 I 0.750
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.750
TCM_000266 Theobroma cacao TCM_000266 I 0.750
Bo3g014100 Brassica oleracea Bo3g014100 I 0.750
AP3 Vitis vinifera VIT_18s0001g13460 I 0.750
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.750
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.750
Bra002285 Brassica rapa Bra002285 I 0.750
Bra020093 Brassica rapa Bra020093 I 0.750
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.750
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.750
Bra006549 Brassica rapa Bra006549 I 0.750
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.729
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
Pm006266 Prunus mume Pm006266 I 0.729
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.729
Ca_04909 Cicer arietinum Ca_04909 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.729
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.729
Cla021117 Citrullus lanatus Cla021117 I 0.729
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.729
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.729
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.729
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.729
Pm026712 Prunus mume Pm026712 I 0.723
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.708
AP3 Arabidopsis thaliana AT3G54340 D 0.708
Bra012997 Brassica rapa Bra012997 I 0.708
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.708
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.708
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.708
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.708
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.708
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.708
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.708
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.708
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.708
MDP0000315938 Malus domestica MDP0000315938 I 0.708
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.708
MDP0000224779 Malus domestica MDP0000224779 I 0.708
Bo7g098190 Brassica oleracea Bo7g098190 I 0.708
MDP0000184294 Malus domestica MDP0000184294 I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.708
MDP0000133037 Malus domestica MDP0000133037 I 0.708
BGIOSGA019900 Oryza indica BGIOSGA019900 I 0.708
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.708
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.708
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
Si002929m.g Setaria italica Si002929m.g I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.708
ONIVA05G17790 Oryza nivara ONIVA05G17790 I 0.708
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.708
OMERI05G14780 Oryza meridionalis OMERI05G14780 I 0.708
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.708
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.708
ORUFI05G18270 Oryza rufipogon ORUFI05G18270 I 0.708
MADS4 Oryza sativa OS05G0423400 I 0.708
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.708
ORGLA05G0147400 Oryza glaberrima ORGLA05G0147400 I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.708
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.708
Ca_01994 Cicer arietinum Ca_01994 I 0.708
OLONG_005253 Oryza longistaminata OLONG_005253 I 0.708
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.708
MADS2 Oryza sativa OS01G0883100 D 0.708
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.708
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.708
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.708
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.708
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.708
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.708
OBART05G17040 Oryza barthii OBART05G17040 I 0.708
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.708
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.708
OBART01G39540 Oryza barthii OBART01G39540 I 0.708
OB05G24910 Oryza brachyantha OB05G24910 I 0.708
OB01G48280 Oryza brachyantha OB01G48280 I 0.708
29782.m000119 Ricinus communis 29782.m000119 I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.708