Pm017638 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm017638 T257064_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN

NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708 0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH

DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708 0.708
AGL15
M10927_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708 0.708
AGL15
M10928_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708 0.708
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.708 0.708
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm017638 MADS box 21 68

Links

Other MADS box family TFs
Other Prunus mume TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa024464mg Prunus persica PRUPE_ppa024464mg I 1.000
MDP0000237091 Malus domestica MDP0000237091 I 0.917
gene00615-v1.0-hybrid Fragaria vesca gene00615-v1.0-hybrid N 0.812
gene15090-v1.0-hybrid Fragaria vesca gene15090-v1.0-hybrid N 0.750
Cla010744 Citrullus lanatus Cla010744 N 0.729
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.708
Q9SBQ1_PETHY Petunia x hybrida Q9SBQ1_PETHY D 0.708
Ciclev10030327m.g Citrus clementina Ciclev10030327m.g N 0.708
Q8GT99_TOBAC Nicotiana tabacum Q8GT99_TOBAC D 0.708
orange1.1g045249m.g Citrus sinensis orange1.1g045249m.g N 0.708
TCM_024579 Theobroma cacao TCM_024579 I 0.708
MTR_1g041615 Medicago truncatula MTR_1g041615 I 0.708
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
PGSC0003DMG400004081 Solanum tuberosum PGSC0003DMG400004081 I 0.708
PGSC0003DMG400024625 Solanum tuberosum PGSC0003DMG400024625 I 0.708
Solyc06g069430.2 Solanum lycopersicum Solyc06g069430.2 I 0.708
Solyc03g114830.2 Solanum lycopersicum Solyc03g114830.2 I 0.708
AGL8_SOLLC Solanum lycopersicum AGL8_SOLLC I 0.708