Pm026712 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm026712 T257091_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.957 0.957
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.830 0.830
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.787 0.787
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.766 0.766
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.766 0.766
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.766 0.766
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.766 0.766
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm026712 MADS box 10 56

Links

Other MADS box family TFs
Other Prunus mume TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.979
MDP0000133037 Malus domestica MDP0000133037 I 0.957
MDP0000224779 Malus domestica MDP0000224779 I 0.957
MDP0000315938 Malus domestica MDP0000315938 I 0.957
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.957
MDP0000184294 Malus domestica MDP0000184294 I 0.957
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.915
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.915
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.915
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.915
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.896
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.896
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.896
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.894
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.894
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.894
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.872
AP3 Vitis vinifera VIT_18s0001g13460 I 0.872
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.872
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.872
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.854
TCM_000266 Theobroma cacao TCM_000266 I 0.854
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.851
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.851
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.851
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.851
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.851
29782.m000119 Ricinus communis 29782.m000119 I 0.851
Ca_01994 Cicer arietinum Ca_01994 I 0.851
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.833
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.833
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.833
Ca_04909 Cicer arietinum Ca_04909 I 0.830
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.830
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.830
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.830
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.830
Cla021117 Citrullus lanatus Cla021117 I 0.830
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.830
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.830
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.830
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.809
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.809
TCM_034148 Theobroma cacao TCM_034148 I 0.809
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.809
Pm006266 Prunus mume Pm006266 I 0.809
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.809
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.809
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.792
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.792
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.787
mgf015533m Mimulus guttatus mgf015533m I 0.787
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.766
OBART06G27230 Oryza barthii OBART06G27230 I 0.766
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.766
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.766
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.766
Si007221m.g Setaria italica Si007221m.g I 0.766
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.766
OB06G35020 Oryza brachyantha OB06G35020 I 0.766
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.766
Bo4g120010 Brassica oleracea Bo4g120010 I 0.766
Bo8g083600 Brassica oleracea Bo8g083600 I 0.766
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.766
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.766
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.766
AP3 Arabidopsis thaliana AT3G54340 D 0.766
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.766
Bra007067 Brassica rapa Bra007067 I 0.766
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.766
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.766
Bra014822 Brassica rapa Bra014822 I 0.766
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.766
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.766
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.766
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.766
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.766
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.766
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.766
MADS16 Oryza sativa OS06G0712700 D 0.766
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.766
AP3 Populus trichocarpa POPTR_0002s02990 I 0.766
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.766
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.766
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.766
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.766
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.750
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.750
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.750
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.750
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.750
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.750
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.745
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.745
mgf000046m Mimulus guttatus mgf000046m I 0.745
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.745
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.745
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.745
TCM_035212 Theobroma cacao TCM_035212 I 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.723
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.723
Pm004718 Prunus mume Pm004718 I 0.723
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.723
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.723
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.723
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.723
Cla023547 Citrullus lanatus Cla023547 I 0.723
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.708
mgf006158m Mimulus guttatus mgf006158m I 0.702
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.702
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.702
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.702
mgf003143m Mimulus guttatus mgf003143m I 0.702
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.702
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.702
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.702
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.702
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.702
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.702
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.702
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.702
mgf008207m Mimulus guttatus mgf008207m I 0.702
Ca_03887 Cicer arietinum Ca_03887 I 0.702
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.702
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.702
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.702