CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29693.m002041
(
Ricinus communis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
29693.m002041
T257143_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29693.m002041
MADS box
20
67
KIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSF
Links
Other
MADS box
family TFs
Other
Ricinus communis
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.896
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.875
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.875
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.854
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.854
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.854
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.833
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.833
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.833
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.833
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.833
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.833
Cla009921
Citrullus lanatus
Cla009921
N
0.833
29693.m002042
Ricinus communis
29693.m002042
N
0.833
cassava46357.m1
Manihot esculenta
cassava46357.m1
N
0.812
POPTR_0009s05050
Populus trichocarpa
POPTR_0009s05050
N
0.812
Ciclev10006708m.g
Citrus clementina
Ciclev10006708m.g
N
0.792
Ciclev10007010m.g
Citrus clementina
Ciclev10007010m.g
N
0.792
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.792
orange1.1g038327m.g
Citrus sinensis
orange1.1g038327m.g
N
0.778
PRUPE_ppa024983mg
Prunus persica
PRUPE_ppa024983mg
N
0.771
SapurV1A.2714s0010
Salix purpurea
SapurV1A.2714s0010
N
0.771
SapurV1A.0619s0200
Salix purpurea
SapurV1A.0619s0200
N
0.771
Pm008734
Prunus mume
Pm008734
N
0.771
SapurV1A.1613s0060
Salix purpurea
SapurV1A.1613s0060
N
0.771
Ciclev10006405m.g
Citrus clementina
Ciclev10006405m.g
N
0.750
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.750
Ciclev10006500m.g
Citrus clementina
Ciclev10006500m.g
N
0.750
Eucgr.E02870
Eucalyptus grandis
Eucgr.E02870
N
0.750
orange1.1g039494m.g
Citrus sinensis
orange1.1g039494m.g
N
0.750
Ciclev10006588m.g
Citrus clementina
Ciclev10006588m.g
N
0.744
orange1.1g043113m.g
Citrus sinensis
orange1.1g043113m.g
N
0.735
Ciclev10006740m.g
Citrus clementina
Ciclev10006740m.g
N
0.729
Lus10025872.g
Linum usitatissimum
Lus10025872.g
N
0.729
Lus10028473.g
Linum usitatissimum
Lus10028473.g
N
0.729
Lus10028490.g
Linum usitatissimum
Lus10028490.g
N
0.729
Gorai.009G284300
Gossypium raimondii
Gorai.009G284300
N
0.729
Ciclev10006803m.g
Citrus clementina
Ciclev10006803m.g
N
0.729
Ciclev10006615m.g
Citrus clementina
Ciclev10006615m.g
N
0.729
orange1.1g047467m.g
Citrus sinensis
orange1.1g047467m.g
N
0.729
Ciclev10007015m.g
Citrus clementina
Ciclev10007015m.g
N
0.729
Ciclev10006546m.g
Citrus clementina
Ciclev10006546m.g
N
0.725
Ciclev10006427m.g
Citrus clementina
Ciclev10006427m.g
N
0.711
Eucgr.E02827
Eucalyptus grandis
Eucgr.E02827
N
0.708
Eucgr.E02824
Eucalyptus grandis
Eucgr.E02824
N
0.708
PRUPE_ppa021886mg
Prunus persica
PRUPE_ppa021886mg
N
0.708
Eucgr.E02829
Eucalyptus grandis
Eucgr.E02829
N
0.708
Eucgr.E02872
Eucalyptus grandis
Eucgr.E02872
N
0.708
Gorai.010G132900
Gossypium raimondii
Gorai.010G132900
N
0.708
Eucgr.L01236
Eucalyptus grandis
Eucgr.L01236
N
0.708
Gorai.010G133300
Gossypium raimondii
Gorai.010G133300
N
0.708