29782.m000119 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 29782.m000119 T257146_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.833 0.833
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.812 0.812
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.792 0.792
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.792 0.792
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.771 0.771
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.729 0.729
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.729 0.729
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29782.m000119 MADS box 10 58

Links

Other MADS box family TFs
Other Ricinus communis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_000266 Theobroma cacao TCM_000266 I 0.938
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.917
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.917
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.917
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.896
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.896
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.896
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.896
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.896
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.875
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.875
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.875
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.875
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.875
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.854
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.854
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.854
Pm026712 Prunus mume Pm026712 I 0.851
MDP0000133037 Malus domestica MDP0000133037 I 0.833
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.833
Ca_01994 Cicer arietinum Ca_01994 I 0.833
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.833
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.833
Cla021117 Citrullus lanatus Cla021117 I 0.833
MDP0000315938 Malus domestica MDP0000315938 I 0.833
MDP0000224779 Malus domestica MDP0000224779 I 0.833
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.833
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.833
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.833
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.833
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.833
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.833
MDP0000184294 Malus domestica MDP0000184294 I 0.833
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.833
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.812
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.812
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.812
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.812
Ca_04909 Cicer arietinum Ca_04909 I 0.812
AP3 Vitis vinifera VIT_18s0001g13460 I 0.812
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.812
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.812
Bo8g083600 Brassica oleracea Bo8g083600 I 0.812
Bo4g120010 Brassica oleracea Bo4g120010 I 0.812
Bra014822 Brassica rapa Bra014822 I 0.812
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.812
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.812
Bra007067 Brassica rapa Bra007067 I 0.812
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.812
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.812
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.812
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.792
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.792
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.792
Pm006266 Prunus mume Pm006266 I 0.792
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.792
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.792
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.792
AP3 Arabidopsis thaliana AT3G54340 D 0.792
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.792
GRMZM2G137289 Zea mays GRMZM2G137289 I 0.792
TCM_034148 Theobroma cacao TCM_034148 I 0.792
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.771
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.771
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.771
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.771
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.771
mgf015533m Mimulus guttatus mgf015533m I 0.771
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.771
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.771
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.771
OB06G35020 Oryza brachyantha OB06G35020 I 0.771
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.771
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.771
OBART06G27230 Oryza barthii OBART06G27230 I 0.771
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.771
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.771
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.771
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.771
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.771
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.771
MADS16 Oryza sativa OS06G0712700 D 0.771
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.771
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.771
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.771
Si007221m.g Setaria italica Si007221m.g I 0.771
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.771
mgf000046m Mimulus guttatus mgf000046m I 0.766
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
AP3 Populus trichocarpa POPTR_0002s02990 I 0.750
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.750
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.750
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.750
TCM_035212 Theobroma cacao TCM_035212 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.729
F775_30609 Aegilops tauschii F775_30609 I 0.724
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.717
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.708
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.708
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.708
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.708
mgf008207m Mimulus guttatus mgf008207m I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.708
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.708
Pm004718 Prunus mume Pm004718 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
mgf006158m Mimulus guttatus mgf006158m I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.708
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.708
mgf003143m Mimulus guttatus mgf003143m I 0.708
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.708
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.708