CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29782.m000119
(
Ricinus communis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
29782.m000119
T257146_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8VWZ4_MALDO
M11026_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.833
0.833
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.812
0.812
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.792
0.792
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.792
0.792
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.771
0.771
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.729
0.729
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.729
0.729
FBP1_PETHY
M10996_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29782.m000119
MADS box
10
58
KIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKFHEF
Links
Other
MADS box
family TFs
Other
Ricinus communis
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_000266
Theobroma cacao
TCM_000266
I
0.938
POPTR_0005s12000
Populus trichocarpa
POPTR_0005s12000
I
0.917
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.917
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.917
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.896
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.896
SapurV1A.2002s0050
Salix purpurea
SapurV1A.2002s0050
I
0.896
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.896
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.896
evm.TU.supercontig_6.199
Carica papaya
evm.TU.supercontig_6.199
I
0.875
POPTR_0007s13660
Populus trichocarpa
POPTR_0007s13660
I
0.875
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.875
evm.TU.supercontig_6.202
Carica papaya
evm.TU.supercontig_6.202
I
0.875
SapurV1A.0569s0080
Salix purpurea
SapurV1A.0569s0080
I
0.875
Solyc02g084630.2
Solanum lycopersicum
Solyc02g084630.2
I
0.854
PGSC0003DMG400003541
Solanum tuberosum
PGSC0003DMG400003541
I
0.854
SapurV1A.0396s0210
Salix purpurea
SapurV1A.0396s0210
I
0.854
Pm026712
Prunus mume
Pm026712
I
0.851
MDP0000133037
Malus domestica
MDP0000133037
I
0.833
Q8VWZ4_MALDO
Malus domestica
Q8VWZ4_MALDO
D
0.833
Ca_01994
Cicer arietinum
Ca_01994
I
0.833
chr2.CM0249.370.nd
Lotus japonicus
chr2.CM0249.370.nd
I
0.833
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.833
Cla021117
Citrullus lanatus
Cla021117
I
0.833
MDP0000315938
Malus domestica
MDP0000315938
I
0.833
MDP0000224779
Malus domestica
MDP0000224779
I
0.833
Lus10010630.g
Linum usitatissimum
Lus10010630.g
I
0.833
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.833
Lus10031960.g
Linum usitatissimum
Lus10031960.g
I
0.833
GLYMA11G07820
Glycine max
GLYMA11G07820
I
0.833
gene14896-v1.0-hybrid
Fragaria vesca
gene14896-v1.0-hybrid
I
0.833
GLYMA01G37470
Glycine max
GLYMA01G37470
I
0.833
MDP0000184294
Malus domestica
MDP0000184294
I
0.833
MTR_5g021270
Medicago truncatula
MTR_5g021270
I
0.833
Solyc04g081000.2
Solanum lycopersicum
Solyc04g081000.2
I
0.812
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.812
Thhalv10010683m.g
Eutrema salsugineum
Thhalv10010683m.g
I
0.812
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.812
Ca_04909
Cicer arietinum
Ca_04909
I
0.812
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.812
Q40513_TOBAC
Nicotiana tabacum
Q40513_TOBAC
D
0.812
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.812
Bo8g083600
Brassica oleracea
Bo8g083600
I
0.812
Bo4g120010
Brassica oleracea
Bo4g120010
I
0.812
Bra014822
Brassica rapa
Bra014822
I
0.812
PGSC0003DMG400003709
Solanum tuberosum
PGSC0003DMG400003709
I
0.812
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.812
Bra007067
Brassica rapa
Bra007067
I
0.812
PRUPE_ppa010727mg
Prunus persica
PRUPE_ppa010727mg
I
0.812
GSMUA_Achr9G20940_001
Musa acuminata
GSMUA_Achr9G20940_001
I
0.812
GSMUA_Achr9G20950_001
Musa acuminata
GSMUA_Achr9G20950_001
I
0.812
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.792
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.792
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.792
Pm006266
Prunus mume
Pm006266
I
0.792
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.792
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.792
Eucgr.F01615
Eucalyptus grandis
Eucgr.F01615
I
0.792
AP3
Arabidopsis thaliana
AT3G54340
D
0.792
Gorai.009G271100
Gossypium raimondii
Gorai.009G271100
I
0.792
GRMZM2G137289
Zea mays
GRMZM2G137289
I
0.792
TCM_034148
Theobroma cacao
TCM_034148
I
0.792
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.771
OGLUM06G28660
Oryza glumaepatula
OGLUM06G28660
I
0.771
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.771
orange1.1g040046m.g
Citrus sinensis
orange1.1g040046m.g
I
0.771
Pavir.Db00185
Panicum virgatum
Pavir.Db00185
I
0.771
mgf015533m
Mimulus guttatus
mgf015533m
I
0.771
Ciclev10002410m.g
Citrus clementina
Ciclev10002410m.g
I
0.771
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.771
LPERR06G22780
Leersia perrieri
LPERR06G22780
I
0.771
OB06G35020
Oryza brachyantha
OB06G35020
I
0.771
Eucgr.I02376
Eucalyptus grandis
Eucgr.I02376
I
0.771
Pavir.J11672
Panicum virgatum
Pavir.J11672
I
0.771
OBART06G27230
Oryza barthii
OBART06G27230
I
0.771
Aquca_007_00336
Aquilegia coerulea
Aquca_007_00336
I
0.771
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.771
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.771
OMERI06G27290
Oryza meridionalis
OMERI06G27290
I
0.771
BGIOSGA020546
Oryza indica
BGIOSGA020546
I
0.771
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.771
ONIVA06G29820
Oryza nivara
ONIVA06G29820
I
0.771
ORUFI06G29170
Oryza rufipogon
ORUFI06G29170
I
0.771
MADS16
Oryza sativa
OS06G0712700
D
0.771
GRMZM2G139073
Zea mays
GRMZM2G139073
I
0.771
ORGLA06G0229200
Oryza glaberrima
ORGLA06G0229200
I
0.771
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.771
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.771
Sb10g029810
Sorghum bicolor
Sb10g029810
I
0.771
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.771
Si007221m.g
Setaria italica
Si007221m.g
I
0.771
OLONG_004226
Oryza longistaminata
OLONG_004226
I
0.771
mgf000046m
Mimulus guttatus
mgf000046m
I
0.766
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.760
AP3
Populus trichocarpa
POPTR_0002s02990
I
0.750
Aquca_006_00072
Aquilegia coerulea
Aquca_006_00072
I
0.750
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.750
AMTR_s00066p00109320
Amborella trichopoda
AMTR_s00066p00109320
I
0.750
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.750
TCM_035212
Theobroma cacao
TCM_035212
I
0.729
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.729
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.729
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.729
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.729
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.729
29648.m001978
Ricinus communis
29648.m001978
I
0.729
Aquca_006_00074
Aquilegia coerulea
Aquca_006_00074
I
0.729
F775_30609
Aegilops tauschii
F775_30609
I
0.724
OPUNC06G24880
Oryza punctata
OPUNC06G24880
I
0.717
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
0.708
orange1.1g024093m.g
Citrus sinensis
orange1.1g024093m.g
I
0.708
SapurV1A.0025s0830
Salix purpurea
SapurV1A.0025s0830
I
0.708
Lus10042749.g
Linum usitatissimum
Lus10042749.g
I
0.708
mgf008207m
Mimulus guttatus
mgf008207m
I
0.708
Pm018087
Prunus mume
Pm018087
I
0.708
FBP1_PETHY
Petunia x hybrida
FBP1_PETHY
D
0.708
cassava28648.m1
Manihot esculenta
cassava28648.m1
I
0.708
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.708
Pm004718
Prunus mume
Pm004718
I
0.708
Cla023547
Citrullus lanatus
Cla023547
I
0.708
PRUPE_ppa019932mg
Prunus persica
PRUPE_ppa019932mg
I
0.708
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.708
PI
Vitis vinifera
VIT_18s0001g01760
I
0.708
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.708
e_gw1.171.4.1
Physcomitrella patens
e_gw1.171.4.1
I
0.708
mgf006158m
Mimulus guttatus
mgf006158m
I
0.708
Aquca_032_00047
Aquilegia coerulea
Aquca_032_00047
I
0.708
Ciclev10002471m.g
Citrus clementina
Ciclev10002471m.g
I
0.708
Ciclev10009338m.g
Citrus clementina
Ciclev10009338m.g
I
0.708
mgf003143m
Mimulus guttatus
mgf003143m
I
0.708
estExt_gwp_gw1.C_900087
Physcomitrella patens
estExt_gwp_gw1.C_900087
I
0.708
e_gw1.209.37.1
Physcomitrella patens
e_gw1.209.37.1
I
0.708
estExt_fgenesh1_kg.C_260002
Physcomitrella patens
estExt_fgenesh1_kg.C_260002
I
0.708
estExt_gwp_gw1.C_1630046
Physcomitrella patens
estExt_gwp_gw1.C_1630046
I
0.708
Lus10029719.g
Linum usitatissimum
Lus10029719.g
I
0.708