30138.m004061 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 30138.m004061 T257161_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30138.m004061 MADS box 10 57

Links

Other MADS box family TFs
Other Ricinus communis TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_13266 Aegilops tauschii F775_13266 I 0.771
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.792
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.833
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.708
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.854
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.708
AGL65 Arabidopsis thaliana AT1G18750 D 0.875
AGL66 Arabidopsis thaliana AT1G77980 I 0.708
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.875
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.729
Bo6g109050 Brassica oleracea Bo6g109050 I 0.717
Bo8g068060 Brassica oleracea Bo8g068060 I 0.896
Bo8g104060 Brassica oleracea Bo8g104060 I 0.896
Bra016544 Brassica rapa Bra016544 I 0.896
Bra004393 Brassica rapa Bra004393 I 0.717
Bra031049 Brassica rapa Bra031049 I 0.896
Bra025685 Brassica rapa Bra025685 I 0.854
PK21701.1 Cannabis sativa PK21701.1 I 0.896
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.854
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.708
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.854
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.708
Ca_18082 Cicer arietinum Ca_18082 I 0.708
Cla010361 Citrullus lanatus Cla010361 I 0.771
Cla018884 Citrullus lanatus Cla018884 I 0.792
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.917
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.917
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.783
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.792
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.875
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.875
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.854
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.792
Gorai.010G096200 Gossypium raimondii Gorai.010G096200 N 0.708
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.938
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.938
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.750
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.750
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.896
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.708
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.875
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.708
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.833
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.739
MDP0000193129 Malus domestica MDP0000193129 I 0.854
MDP0000147667 Malus domestica MDP0000147667 I 0.750
MDP0000773068 Malus domestica MDP0000773068 I 0.729
MDP0000146231 Malus domestica MDP0000146231 I 0.729
MDP0000146415 Malus domestica MDP0000146415 I 0.729
MDP0000919323 Malus domestica MDP0000919323 I 0.729
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.938
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.917
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.708
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.833
mgf004425m Mimulus guttatus mgf004425m I 0.771
mgf000945m Mimulus guttatus mgf000945m I 0.771
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.771
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.729
OBART11G21780 Oryza barthii OBART11G21780 N 0.729
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.729
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.750
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.750
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.739
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.729
OS11G0658700 Oryza sativa OS11G0658700 N 0.729
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.771
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.771
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.792
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.854
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.729
Pm024895 Prunus mume Pm024895 I 0.812
Pm006479 Prunus mume Pm006479 I 0.729
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.729
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.812
29813.m001508 Ricinus communis 29813.m001508 I 0.739
Si028357m.g Setaria italica Si028357m.g N 0.771
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.792
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.729
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.812
TCM_014051 Theobroma cacao TCM_014051 I 0.917
TCM_011687 Theobroma cacao TCM_011687 I 0.739
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.771
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.771
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.771
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.771
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.917
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.771