CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava10519.m1
(
Manihot esculenta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
cassava10519.m1
T257169_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava10519.m1
MADS box
10
57
MVKDRNSRQVTFSKRRAGLFKKAHELAILCAAQIAIVVFSPGGKPFSF
Links
Other
MADS box
family TFs
Other
Manihot esculenta
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.896
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.896
29693.m002039
Ricinus communis
29693.m002039
I
0.896
TCM_029518
Theobroma cacao
TCM_029518
I
0.854
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.854
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.854
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.854
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.833
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.833
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.833
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.833
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.812
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.812
Cla019897
Citrullus lanatus
Cla019897
N
0.812
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.812
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.792
Pm030655
Prunus mume
Pm030655
I
0.792
Ca_05023
Cicer arietinum
Ca_05023
I
0.792
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.792
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.792
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.771
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.771
AGL29
Arabidopsis thaliana
AT2G34440
I
0.771
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.771
MDP0000274606
Malus domestica
MDP0000274606
N
0.771
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.771
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.771
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.771
MDP0000120467
Malus domestica
MDP0000120467
N
0.771
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.771
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.771
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.750
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.750
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.750
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.750
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.750
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.750
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.750
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.750
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.750
Ca_24185
Cicer arietinum
Ca_24185
I
0.750
Bra021910
Brassica rapa
Bra021910
I
0.750
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.729
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.729
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.729
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.729
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.729
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.729
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.729
F775_21960
Aegilops tauschii
F775_21960
N
0.711
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.708
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.708
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.708
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.708
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.708
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.708
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.708
AGL91
Arabidopsis thaliana
AT3G66656
D
0.708
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.708
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707
Traes_7DL_A773A64E2
Triticum aestivum
Traes_7DL_A773A64E2
N
0.707
LjSGA_147855.1
Lotus japonicus
LjSGA_147855.1
N
0.700