CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
cassava19791.m1
(
Manihot esculenta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
cassava19791.m1
T257184_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.896
0.896
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava19791.m1
MADS box
10
57
RLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLLFSPTGRPTLF
Links
Other
MADS box
family TFs
Other
Manihot esculenta
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.938
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.938
TCM_014051
Theobroma cacao
TCM_014051
I
0.938
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.938
30138.m004061
Ricinus communis
30138.m004061
I
0.938
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.917
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.917
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.896
AGL65
Arabidopsis thaliana
AT1G18750
D
0.896
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.896
Bra031049
Brassica rapa
Bra031049
I
0.875
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.875
Bra016544
Brassica rapa
Bra016544
I
0.875
MDP0000193129
Malus domestica
MDP0000193129
I
0.875
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.875
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.875
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.875
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.875
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.875
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.875
PK21701.1
Cannabis sativa
PK21701.1
I
0.875
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.854
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.854
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.851
Pm024895
Prunus mume
Pm024895
I
0.833
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.833
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.833
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.833
Bra025685
Brassica rapa
Bra025685
I
0.833
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.826
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.826
F775_13266
Aegilops tauschii
F775_13266
I
0.826
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.826
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.826
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.826
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.812
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.812
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.812
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.812
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.804
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.771
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.771
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.771
Cla018884
Citrullus lanatus
Cla018884
I
0.771
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.771
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.761
MDP0000146415
Malus domestica
MDP0000146415
I
0.756
MDP0000773068
Malus domestica
MDP0000773068
I
0.756
MDP0000919323
Malus domestica
MDP0000919323
I
0.756
mgf004425m
Mimulus guttatus
mgf004425m
I
0.750
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.750
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.750
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.750
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.750
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.750
mgf000945m
Mimulus guttatus
mgf000945m
I
0.750
Cla010361
Citrullus lanatus
Cla010361
I
0.750
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.750
Pm006479
Prunus mume
Pm006479
I
0.739
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.739
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.739
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.739
Si028357m.g
Setaria italica
Si028357m.g
N
0.739
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.729
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.729
MDP0000147667
Malus domestica
MDP0000147667
I
0.729
AGL66
Arabidopsis thaliana
AT1G77980
I
0.729
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.729
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.723
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.717
AGL30
Arabidopsis thaliana
AT2G03060
I
0.717
29813.m001508
Ricinus communis
29813.m001508
I
0.717
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.717
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.717
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.708
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.708
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.708
Bra012308
Brassica rapa
Bra012308
I
0.708
Bra016386
Brassica rapa
Bra016386
I
0.708
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.708
Bra015643
Brassica rapa
Bra015643
I
0.708
MDP0000146231
Malus domestica
MDP0000146231
I
0.708
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.708
Pm019181
Prunus mume
Pm019181
I
0.708
29908.m005982
Ricinus communis
29908.m005982
I
0.708
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.708
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.708
Gorai.010G096200
Gossypium raimondii
Gorai.010G096200
N
0.708
OB08G26170
Oryza brachyantha
OB08G26170
I
0.708
AGL104
Arabidopsis thaliana
AT1G22130
I
0.708
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.708
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.708
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.708