cassava19791.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava19791.m1 T257184_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19791.m1 MADS box 10 57

Links

Other MADS box family TFs
Other Manihot esculenta TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.717
29908.m005982 Ricinus communis 29908.m005982 I 0.708
30138.m004061 Ricinus communis 30138.m004061 I 0.938
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.708
AGL104 Arabidopsis thaliana AT1G22130 I 0.708
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.717
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.917
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.875
AGL65 Arabidopsis thaliana AT1G18750 D 0.896
AGL66 Arabidopsis thaliana AT1G77980 I 0.729
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.729
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.771
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.812
Bo6g121640 Brassica oleracea Bo6g121640 I 0.708
Bo7g060150 Brassica oleracea Bo7g060150 I 0.708
Bo8g068060 Brassica oleracea Bo8g068060 I 0.875
Bo8g071330 Brassica oleracea Bo8g071330 I 0.708
Bo8g104060 Brassica oleracea Bo8g104060 I 0.875
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.708
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.896
Bra012308 Brassica rapa Bra012308 I 0.708
Bra015643 Brassica rapa Bra015643 I 0.708
Bra016386 Brassica rapa Bra016386 I 0.708
Bra016544 Brassica rapa Bra016544 I 0.875
Bra025685 Brassica rapa Bra025685 I 0.833
Bra031049 Brassica rapa Bra031049 I 0.875
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.750
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.729
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.833
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.833
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.729
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.938
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.812
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.938
Cla010361 Citrullus lanatus Cla010361 I 0.750
Cla018884 Citrullus lanatus Cla018884 I 0.771
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.771
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.854
F775_13266 Aegilops tauschii F775_13266 I 0.826
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.875
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.771
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.875
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.875
Gorai.010G096200 Gossypium raimondii Gorai.010G096200 N 0.708
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.750
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.723
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.750
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.708
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.917
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.896
MDP0000146231 Malus domestica MDP0000146231 I 0.708
MDP0000146415 Malus domestica MDP0000146415 I 0.756
MDP0000147667 Malus domestica MDP0000147667 I 0.729
MDP0000193129 Malus domestica MDP0000193129 I 0.875
MDP0000773068 Malus domestica MDP0000773068 I 0.756
MDP0000919323 Malus domestica MDP0000919323 I 0.756
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.771
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.708
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.812
OB08G26170 Oryza brachyantha OB08G26170 I 0.708
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.739
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.938
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.750
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.750
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.851
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.750
PK21701.1 Cannabis sativa PK21701.1 I 0.875
Pm006479 Prunus mume Pm006479 I 0.739
Pm019181 Prunus mume Pm019181 I 0.708
Pm024895 Prunus mume Pm024895 I 0.833
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.708
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.833
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.739
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.826
Si028357m.g Setaria italica Si028357m.g N 0.739
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.812
TCM_014051 Theobroma cacao TCM_014051 I 0.938
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.854
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.708
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.875
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.826
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.826
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.826
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.826