CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava19828.m1
(
Manihot esculenta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
cassava19828.m1
T257185_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.854
0.854
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava19828.m1
MADS box
10
58
YITNDSARKATYKKRKKGLMKKVSELSTLCGIDACAIIYSPYDSQPEVW
Links
Other
MADS box
family TFs
Other
Manihot esculenta
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACAC_0000445401
Angiostrongylus cantonensis
ACAC_0000445401
N
0.000
ACAC_0000956101
Angiostrongylus cantonensis
ACAC_0000956101
I
0.000
ACOC_0000749401
Angiostrongylus costaricensis
ACOC_0000749401
I
0.000
ANCCAN_20599
Ancylostoma caninum
ANCCAN_20599
I
0.000
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.000
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.000
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.000
ASIM_0001548701
Anisakis simplex
ASIM_0001548701
I
0.000
ASU_00971
Ascaris suum
ASU_00971
I
0.000
ASU_13587
Ascaris suum
ASU_13587
I
0.000
Bm5457
Brugia malayi
Bm5457
I
0.000
BTMF_0001565301
Brugia timori
BTMF_0001565301
I
0.000
BXY_0053200
Bursaphelenchus xylophilus
BXY_0053200
I
0.000
BXY_0861500
Bursaphelenchus xylophilus
BXY_0861500
I
0.000
BXY_1082600
Bursaphelenchus xylophilus
BXY_1082600
I
0.000
CBG03466
Caenorhabditis briggsae
CBG03466
I
0.000
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.000
CBG04240
Caenorhabditis briggsae
CBG04240
I
0.000
CBG13142
Caenorhabditis briggsae
CBG13142
I
0.000
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.000
CBG14997
Caenorhabditis briggsae
CBG14997
I
0.000
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.000
CBG22776
Caenorhabditis briggsae
CBG22776
I
0.000
CBN00088
Caenorhabditis brenneri
CBN00088
I
0.000
CBN04415
Caenorhabditis brenneri
CBN04415
I
0.000
CBN08474
Caenorhabditis brenneri
CBN08474
I
0.000
CBN21958
Caenorhabditis brenneri
CBN21958
I
0.000
CBN28641
Caenorhabditis brenneri
CBN28641
I
0.000
CBN32300
Caenorhabditis brenneri
CBN32300
I
0.000
CGOC_0000279901
Cylicostephanus goldi
CGOC_0000279901
I
0.000
CJA02727
Caenorhabditis japonica
CJA02727
I
0.000
CJA06107
Caenorhabditis japonica
CJA06107
I
0.000
CJA14035
Caenorhabditis japonica
CJA14035
I
0.000
CJA14248
Caenorhabditis japonica
CJA14248
I
0.000
CJA14611
Caenorhabditis japonica
CJA14611
I
0.000
CJA18307
Caenorhabditis japonica
CJA18307
I
0.000
CJA19445
Caenorhabditis japonica
CJA19445
I
0.000
CJA39530
Caenorhabditis japonica
CJA39530
I
0.000
CRE07033
Caenorhabditis remanei
CRE07033
I
0.000
CRE07034
Caenorhabditis remanei
CRE07034
I
0.000
CRE07035
Caenorhabditis remanei
CRE07035
I
0.000
CRE08264
Caenorhabditis remanei
CRE08264
I
0.000
CRE09416
Caenorhabditis remanei
CRE09416
I
0.000
CRE10779
Caenorhabditis remanei
CRE10779
I
0.000
CRE21925
Caenorhabditis remanei
CRE21925
I
0.000
CRE22212
Caenorhabditis remanei
CRE22212
I
0.000
CRE24933
Caenorhabditis remanei
CRE24933
I
0.000
CRE26423
Caenorhabditis remanei
CRE26423
I
0.000
CRE29874
Caenorhabditis remanei
CRE29874
I
0.000
DICVIV_01644
Dictyocaulus viviparus
DICVIV_01644
I
0.000
DICVIV_11073
Dictyocaulus viviparus
DICVIV_11073
I
0.000
DME_0000747901
Dracunculus medinensis
DME_0000747901
I
0.000
EEL_0000204901
Elaeophora elaphi
EEL_0000204901
I
0.000
EEL_0000265301
Elaeophora elaphi
EEL_0000265301
I
0.000
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.000
genemark-nMf.1.1.scaf00584-processed-gene-0.4
Meloidogyne floridensis
genemark-nMf.1.1.scaf00584-processed-gene-0.4
I
0.000
genemark-nMf.1.1.scaf02603-processed-gene-0.3
Meloidogyne floridensis
genemark-nMf.1.1.scaf02603-processed-gene-0.3
I
0.000
GPLIN_000327200
Globodera pallida
GPLIN_000327200
I
0.000
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.000
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.000
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.000
HCOI00094500
Haemonchus contortus
HCOI00094500
I
0.000
HCOI01442000
Haemonchus contortus
HCOI01442000
I
0.000
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.000
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.000
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.000
HPBE_0001033901
Heligmosomoides bakeri
HPBE_0001033901
I
0.000
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.000
HPBE_0001524301
Heligmosomoides bakeri
HPBE_0001524301
I
0.000
HPLM_0000308401
Haemonchus placei
HPLM_0000308401
I
0.000
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.000
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.000
L596_g26401
Steinernema carpocapsae
L596_g26401
I
0.000
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.000
L596_g9277
Steinernema carpocapsae
L596_g9277
I
0.000
L596_g9904
Steinernema carpocapsae
L596_g9904
I
0.000
L889_g15424
Steinernema feltiae
L889_g15424
I
0.000
L889_g16305
Steinernema feltiae
L889_g16305
I
0.000
L889_g25097
Steinernema feltiae
L889_g25097
I
0.000
L889_g31970
Steinernema feltiae
L889_g31970
I
0.000
L889_g366
Steinernema feltiae
L889_g366
I
0.000
L892_g17146
Steinernema scapterisci
L892_g17146
I
0.000
L892_g17832
Steinernema scapterisci
L892_g17832
I
0.000
L892_g186
Steinernema scapterisci
L892_g186
I
0.000
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.000
L893_g263
Steinernema glaseri
L893_g263
I
0.000
L893_g33656
Steinernema glaseri
L893_g33656
I
0.000
L893_g5404
Steinernema glaseri
L893_g5404
I
0.000
L893_g6023
Steinernema glaseri
L893_g6023
I
0.000
L893_g6565
Steinernema glaseri
L893_g6565
I
0.000
L898_g11608
Steinernema monticolum
L898_g11608
I
0.000
L898_g18440
Steinernema monticolum
L898_g18440
I
0.000
L898_g5338
Steinernema monticolum
L898_g5338
I
0.000
L898_g9613
Steinernema monticolum
L898_g9613
I
0.000
LOAG_07549
Loa loa
LOAG_07549
I
0.000
LOAG_08636
Loa loa
LOAG_08636
I
0.000
MhA1_Contig1031.frz3.gene17
Meloidogyne hapla
MhA1_Contig1031.frz3.gene17
N
0.000
MhA1_Contig691.frz3.gene13
Meloidogyne hapla
MhA1_Contig691.frz3.gene13
I
0.000
Minc11307
Meloidogyne incognita
Minc11307
I
0.000
nAv.1.0.1.g08447
Acanthocheilonema viteae
nAv.1.0.1.g08447
I
0.000
nAv.1.0.1.g09196
Acanthocheilonema viteae
nAv.1.0.1.g09196
I
0.000
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.000
nDi.2.2.2.g03974
Dirofilaria immitis
nDi.2.2.2.g03974
I
0.000
nDi.2.2.2.g09348
Dirofilaria immitis
nDi.2.2.2.g09348
I
0.000
NECAME_02375
Necator americanus
NECAME_02375
I
0.000
NECAME_11708
Necator americanus
NECAME_11708
N
0.000
nhr-100
Caenorhabditis elegans
WBGene00003690
I
0.000
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.000
nhr-138
Caenorhabditis elegans
WBGene00003728
I
0.000
nhr-14
Caenorhabditis elegans
WBGene00003613
I
0.000
nhr-21
Caenorhabditis elegans
WBGene00003620
I
0.000
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.000
nhr-4
Caenorhabditis elegans
WBGene00003603
I
0.000
nhr-61
Caenorhabditis elegans
WBGene00003651
I
0.000
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.000
nLs.2.1.2.g04051
Litomosoides sigmodontis
nLs.2.1.2.g04051
I
0.000
nLs.2.1.2.g04526
Litomosoides sigmodontis
nLs.2.1.2.g04526
I
0.000
nOo.2.0.1.g02628
Onchocerca ochengi
nOo.2.0.1.g02628
I
0.000
nOo.2.0.1.g03859
Onchocerca ochengi
nOo.2.0.1.g03859
I
0.000
OESDEN_00859
Oesophagostomum dentatum
OESDEN_00859
I
0.000
OFLC_0000076301
Onchocerca flexuosa
OFLC_0000076301
I
0.000
Ppa-nhr-14
Pristionchus pacificus
PPA06980
I
0.000
Ppa-nhr-3
Pristionchus pacificus
PPA28597
I
0.000
Ppa-nhr-61
Pristionchus pacificus
PPA27722
I
0.000
PPA14696
Pristionchus pacificus
PPA14696
I
0.000
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.000
PTRK_0001236400
Parastrongyloides trichosuri
PTRK_0001236400
I
0.000
PTRK_0001591500
Parastrongyloides trichosuri
PTRK_0001591500
I
0.000
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.000
RSKR_0000426600
Rhabditophanes kr3021
RSKR_0000426600
N
0.000
RSKR_0001175400
Rhabditophanes kr3021
RSKR_0001175400
I
0.000
scaffold1338-EXSNAP2012.3
Pristionchus exspectatus
scaffold1338-EXSNAP2012.3
I
0.000
scaffold277-EXSNAP2012.12
Pristionchus exspectatus
scaffold277-EXSNAP2012.12
I
0.000
scaffold395-EXSNAP2012.23
Pristionchus exspectatus
scaffold395-EXSNAP2012.23
I
0.000
scaffold488-EXSNAP2012.17
Pristionchus exspectatus
scaffold488-EXSNAP2012.17
I
0.000
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.000
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.000
SMUV_0000835401
Syphacia muris
SMUV_0000835401
I
0.000
SMUV_0001036101
Syphacia muris
SMUV_0001036101
I
0.000
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.000
SPAL_0001056000
Strongyloides papillosus
SPAL_0001056000
I
0.000
SSTP_0000230100
Strongyloides stercoralis
SSTP_0000230100
I
0.000
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.000
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.000
SVE_1768400
Strongyloides venezuelensis
SVE_1768400
I
0.000
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.000
TCLT_0000342401
Thelazia callipaeda
TCLT_0000342401
I
0.000
TCLT_0000612301
Thelazia callipaeda
TCLT_0000612301
I
0.000
TCNE_0000582701
Toxocara canis
TCNE_0000582701
I
0.000
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.000
TELCIR_16512
Teladorsagia circumcincta
TELCIR_16512
N
0.000
WBGene00239376
Onchocerca volvulus
WBGene00239376
I
0.000
WBGene00240560
Onchocerca volvulus
WBGene00240560
I
0.000