cassava39120.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava39120.m1 T257227_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39120.m1 MADS box 3 50

Links

Other MADS box family TFs
Other Manihot esculenta TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava9826.m1 Manihot esculenta cassava9826.m1 N 0.938
29693.m002041 Ricinus communis 29693.m002041 N 0.875
cassava46357.m1 Manihot esculenta cassava46357.m1 N 0.854
Cucsa.047600 Cucumis sativus Cucsa.047600 N 0.812
Ciclev10006957m.g Citrus clementina Ciclev10006957m.g N 0.812
orange1.1g044532m.g Citrus sinensis orange1.1g044532m.g N 0.812
Ciclev10007104m.g Citrus clementina Ciclev10007104m.g N 0.812
POPTR_0001s25850 Populus trichocarpa POPTR_0001s25850 N 0.812
Ciclev10006530m.g Citrus clementina Ciclev10006530m.g N 0.812
Cla009921 Citrullus lanatus Cla009921 N 0.812
POPTR_0009s05050 Populus trichocarpa POPTR_0009s05050 N 0.812
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.792
29693.m002042 Ricinus communis 29693.m002042 N 0.792
Ciclev10006503m.g Citrus clementina Ciclev10006503m.g N 0.792
Ciclev10006958m.g Citrus clementina Ciclev10006958m.g N 0.792
Ciclev10006708m.g Citrus clementina Ciclev10006708m.g N 0.771
cassava9834.m1 Manihot esculenta cassava9834.m1 N 0.771
Ciclev10006439m.g Citrus clementina Ciclev10006439m.g N 0.771
Pm008734 Prunus mume Pm008734 N 0.750
PRUPE_ppa024983mg Prunus persica PRUPE_ppa024983mg N 0.750
Ciclev10007010m.g Citrus clementina Ciclev10007010m.g N 0.750
orange1.1g039494m.g Citrus sinensis orange1.1g039494m.g N 0.729
Lus10025872.g Linum usitatissimum Lus10025872.g N 0.729
Gorai.009G284300 Gossypium raimondii Gorai.009G284300 N 0.729
Ciclev10006405m.g Citrus clementina Ciclev10006405m.g N 0.729
orange1.1g040485m.g Citrus sinensis orange1.1g040485m.g N 0.729
orange1.1g047467m.g Citrus sinensis orange1.1g047467m.g N 0.729
Ciclev10007015m.g Citrus clementina Ciclev10007015m.g N 0.729
Pm030654 Prunus mume Pm030654 N 0.708
Gorai.010G132900 Gossypium raimondii Gorai.010G132900 N 0.708
Eucgr.E02870 Eucalyptus grandis Eucgr.E02870 N 0.708
Ciclev10006740m.g Citrus clementina Ciclev10006740m.g N 0.708
Ciclev10006803m.g Citrus clementina Ciclev10006803m.g N 0.708
Ciclev10006500m.g Citrus clementina Ciclev10006500m.g N 0.708
Eucgr.E02872 Eucalyptus grandis Eucgr.E02872 N 0.708
Eucgr.L01236 Eucalyptus grandis Eucgr.L01236 N 0.708