CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava46162.m1
(
Manihot esculenta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
cassava46162.m1
T257238_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.875
0.875
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava46162.m1
MADS box
10
57
RLESTSNRQVTYSKRRNGILKKAKELSILCDIDIALLMFSPTGRPTLY
Links
Other
MADS box
family TFs
Other
Manihot esculenta
TFs
136 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PK21701.1
Cannabis sativa
PK21701.1
I
0.938
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.938
TCM_014051
Theobroma cacao
TCM_014051
I
0.938
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.917
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.917
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.917
30138.m004061
Ricinus communis
30138.m004061
I
0.917
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.917
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.896
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.875
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.875
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.875
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.875
AGL65
Arabidopsis thaliana
AT1G18750
D
0.875
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.872
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.854
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.854
Bra031049
Brassica rapa
Bra031049
I
0.854
MDP0000193129
Malus domestica
MDP0000193129
I
0.854
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.854
Bra025685
Brassica rapa
Bra025685
I
0.854
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.854
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.854
Bra016544
Brassica rapa
Bra016544
I
0.854
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.848
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.848
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.848
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.848
F775_13266
Aegilops tauschii
F775_13266
I
0.848
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.848
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.848
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.833
Pm024895
Prunus mume
Pm024895
I
0.833
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.833
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.833
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.833
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.833
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.826
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.826
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.826
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.812
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.812
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.804
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.792
Cla018884
Citrullus lanatus
Cla018884
I
0.792
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.783
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.771
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.771
Cla010361
Citrullus lanatus
Cla010361
I
0.771
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.771
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.771
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.771
MDP0000146231
Malus domestica
MDP0000146231
I
0.761
Si028357m.g
Setaria italica
Si028357m.g
N
0.761
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.761
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.761
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.761
MDP0000146415
Malus domestica
MDP0000146415
I
0.756
MDP0000919323
Malus domestica
MDP0000919323
I
0.756
MDP0000773068
Malus domestica
MDP0000773068
I
0.756
mgf000945m
Mimulus guttatus
mgf000945m
I
0.750
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.750
AGL66
Arabidopsis thaliana
AT1G77980
I
0.750
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.750
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.750
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.750
mgf004425m
Mimulus guttatus
mgf004425m
I
0.750
Ca_18082
Cicer arietinum
Ca_18082
I
0.739
Pm006479
Prunus mume
Pm006479
I
0.739
29813.m001508
Ricinus communis
29813.m001508
I
0.739
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.739
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.739
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.739
Bra012308
Brassica rapa
Bra012308
I
0.729
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.729
OB08G26170
Oryza brachyantha
OB08G26170
I
0.729
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.729
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.729
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.729
MDP0000147667
Malus domestica
MDP0000147667
I
0.729
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.729
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.729
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.729
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.729
29908.m005982
Ricinus communis
29908.m005982
I
0.729
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.729
AGL104
Arabidopsis thaliana
AT1G22130
I
0.729
Bra015643
Brassica rapa
Bra015643
I
0.729
Bra016386
Brassica rapa
Bra016386
I
0.729
Pm019181
Prunus mume
Pm019181
I
0.729
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.723
Ca_16376
Cicer arietinum
Ca_16376
I
0.717
AGL30
Arabidopsis thaliana
AT2G03060
I
0.717
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.717
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.717
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.717
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.717
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.717
TCM_011687
Theobroma cacao
TCM_011687
I
0.717
OS06G0223300
Oryza sativa
OS06G0223300
I
0.708
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.708
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.708
Gorai.005G093000
Gossypium raimondii
Gorai.005G093000
I
0.708
BGIOSGA026745
Oryza indica
BGIOSGA026745
I
0.708
BGIOSGA003731
Oryza indica
BGIOSGA003731
I
0.708
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.708
orange1.1g039560m.g
Citrus sinensis
orange1.1g039560m.g
I
0.708
ORUFI08G21330
Oryza rufipogon
ORUFI08G21330
I
0.708
ORUFI06G08110
Oryza rufipogon
ORUFI06G08110
I
0.708
MDP0000243965
Malus domestica
MDP0000243965
I
0.708
GSMUA_Achr9G13010_001
Musa acuminata
GSMUA_Achr9G13010_001
I
0.708
OBART11G21780
Oryza barthii
OBART11G21780
N
0.708
OGLUM06G08350
Oryza glumaepatula
OGLUM06G08350
I
0.708
Cla014721
Citrullus lanatus
Cla014721
I
0.708
OBART08G19110
Oryza barthii
OBART08G19110
I
0.708
OBART06G07860
Oryza barthii
OBART06G07860
I
0.708
OGLUM08G20110
Oryza glumaepatula
OGLUM08G20110
I
0.708
ONIVA06G09080
Oryza nivara
ONIVA06G09080
I
0.708
TCM_001182
Theobroma cacao
TCM_001182
I
0.708
TCM_034970
Theobroma cacao
TCM_034970
I
0.708
Si013985m.g
Setaria italica
Si013985m.g
I
0.708
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.708
estExt_fgenesh1_pm.C_80015
Physcomitrella patens
estExt_fgenesh1_pm.C_80015
I
0.708
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.708
Carubv10010907m.g
Capsella rubella
Carubv10010907m.g
I
0.708
ORGLA06G0074200
Oryza glaberrima
ORGLA06G0074200
I
0.708
Ciclev10003964m.g
Citrus clementina
Ciclev10003964m.g
I
0.708
OS11G0658700
Oryza sativa
OS11G0658700
N
0.708
gene31290-v1.0-hybrid
Fragaria vesca
gene31290-v1.0-hybrid
I
0.708
Cagra.1707s0007
Capsella grandiflora
Cagra.1707s0007
I
0.708
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.708
ORGLA08G0167200
Oryza glaberrima
ORGLA08G0167200
I
0.708
LPERR08G16000
Leersia perrieri
LPERR08G16000
I
0.708
Aquca_014_00554
Aquilegia coerulea
Aquca_014_00554
I
0.708
Bostr.12659s0064
Boechera stricta
Bostr.12659s0064
I
0.708
OS08G0494100
Oryza sativa
OS08G0494100
I
0.708