CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
cassava46357.m1
(
Manihot esculenta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
cassava46357.m1
T257241_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava46357.m1
MADS box
22
69
KIENQDVMFITFSKRRSGIYKKASELITLTGVKLAFTVFSPAGKPFSF
Links
Other
MADS box
family TFs
Other
Manihot esculenta
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.854
29693.m002041
Ricinus communis
29693.m002041
N
0.812
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.812
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.792
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.750
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.729
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.729
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.729
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.729
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.729
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.729
29693.m002042
Ricinus communis
29693.m002042
N
0.729
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.729
Cla009921
Citrullus lanatus
Cla009921
N
0.729
POPTR_0009s05050
Populus trichocarpa
POPTR_0009s05050
N
0.729
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.708
Ciclev10006708m.g
Citrus clementina
Ciclev10006708m.g
N
0.708