CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.112840
(
Cucumis sativus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cucsa.112840
T257267_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.112840.1
MADS box
10
57
KLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALY
Links
Other
MADS box
family TFs
Other
Cucumis sativus
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla018884
Citrullus lanatus
Cla018884
I
1.000
PK21701.1
Cannabis sativa
PK21701.1
I
0.812
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.804
30138.m004061
Ricinus communis
30138.m004061
I
0.792
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.792
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.792
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.792
Pm024895
Prunus mume
Pm024895
I
0.783
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.783
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.783
MDP0000146415
Malus domestica
MDP0000146415
I
0.778
MDP0000919323
Malus domestica
MDP0000919323
I
0.778
MDP0000773068
Malus domestica
MDP0000773068
I
0.778
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.771
MDP0000193129
Malus domestica
MDP0000193129
I
0.771
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.771
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.771
Bra016544
Brassica rapa
Bra016544
I
0.771
Bra031049
Brassica rapa
Bra031049
I
0.771
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.771
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.771
Bra025685
Brassica rapa
Bra025685
I
0.766
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.761
Ca_16376
Cicer arietinum
Ca_16376
I
0.761
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.761
F775_13266
Aegilops tauschii
F775_13266
I
0.761
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.761
Cla010361
Citrullus lanatus
Cla010361
I
0.761
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.761
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.761
TCM_014051
Theobroma cacao
TCM_014051
I
0.750
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.750
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.745
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.745
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.745
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.745
Bra004393
Brassica rapa
Bra004393
I
0.739
MDP0000146231
Malus domestica
MDP0000146231
I
0.739
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.739
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.739
AGL30
Arabidopsis thaliana
AT2G03060
I
0.739
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.739
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.739
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.739
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.739
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.739
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.739
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.739
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.739
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.739
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.739
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.739
Ca_18082
Cicer arietinum
Ca_18082
I
0.739
TCM_011687
Theobroma cacao
TCM_011687
I
0.739
PK03147.1
Cannabis sativa
PK03147.1
I
0.739
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.739
Pm006479
Prunus mume
Pm006479
I
0.739
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.739
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.729
MDP0000147667
Malus domestica
MDP0000147667
I
0.729
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.729
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.729
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.729
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.729
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.717
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.717
29813.m001508
Ricinus communis
29813.m001508
I
0.717
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.717
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.717
Si028357m.g
Setaria italica
Si028357m.g
N
0.717
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.717
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.717
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.717
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.717
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.717
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.717
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.708
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.708
AGL65
Arabidopsis thaliana
AT1G18750
D
0.708
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.708
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.708
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702