Cucsa.224270 (Cucumis sativus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cucsa.224270 T257281_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.224270.1 MADS box 10 54

Links

Other MADS box family TFs
Other Cucumis sativus TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla009163 Citrullus lanatus Cla009163 I 0.844
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
TCM_026842 Theobroma cacao TCM_026842 I 0.756
cassava38612.m1 Manihot esculenta cassava38612.m1 N 0.756
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.724
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.711
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.711
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
LjSGA_102554.1 Lotus japonicus LjSGA_102554.1 I 0.707
mgf026186m Mimulus guttatus mgf026186m I 0.705
Ca_08934 Cicer arietinum Ca_08934 I 0.705
Ca_06495 Cicer arietinum Ca_06495 I 0.705
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.702
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.702