e_gw1.273.6.1 (Physcomitrella patens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 e_gw1.273.6.1 T257308_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.273.6.1 MADS box 10 57

Links

Other MADS box family TFs
Other Physcomitrella patens TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.958
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.958
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.938
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.938
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.938
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.938
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.938
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.917
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.917
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.875
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.875
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.854
Cla014721 Citrullus lanatus Cla014721 I 0.833
Ca_01572 Cicer arietinum Ca_01572 I 0.812
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.812
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.812
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.812
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.812
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.812
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.812
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.812
Pm005355 Prunus mume Pm005355 I 0.812
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.812
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.792
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.792
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.792
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.792
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.792
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.792
OS08G0494100 Oryza sativa OS08G0494100 I 0.792
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.792
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.792
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.792
Pm019181 Prunus mume Pm019181 I 0.792
Ca_24539 Cicer arietinum Ca_24539 I 0.792
29908.m005982 Ricinus communis 29908.m005982 I 0.792
30170.m013776 Ricinus communis 30170.m013776 I 0.792
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.792
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.792
TCM_034970 Theobroma cacao TCM_034970 I 0.792
Si008439m.g Setaria italica Si008439m.g I 0.792
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.792
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.792
TCM_001182 Theobroma cacao TCM_001182 I 0.792
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.792
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.792
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.792
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.792
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.792
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.792
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.792
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.792
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.792
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.792
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.792
MDP0000243965 Malus domestica MDP0000243965 I 0.792
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.792
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.792
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.792
OB06G17440 Oryza brachyantha OB06G17440 I 0.792
OB08G26170 Oryza brachyantha OB08G26170 I 0.792
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.792
OBART08G19110 Oryza barthii OBART08G19110 I 0.792
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.771
Bra016386 Brassica rapa Bra016386 I 0.771
Bra026507 Brassica rapa Bra026507 I 0.771
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.771
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.771
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.771
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.771
Bo9g014270 Brassica oleracea Bo9g014270 I 0.771
Bo7g060150 Brassica oleracea Bo7g060150 I 0.771
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.771
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.771
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.771
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.771
Bo8g071330 Brassica oleracea Bo8g071330 I 0.771
Bra012308 Brassica rapa Bra012308 I 0.771
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.771
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.771
mgf017317m Mimulus guttatus mgf017317m I 0.771
OS06G0223300 Oryza sativa OS06G0223300 I 0.771
AGL104 Arabidopsis thaliana AT1G22130 I 0.771
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.771
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.771
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.771
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.771
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.771
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.771
OBART06G07860 Oryza barthii OBART06G07860 I 0.771
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.771
Si013985m.g Setaria italica Si013985m.g I 0.771
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.771
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.750
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.750
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.750
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.750
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.750
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.750
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.750
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.750
MDP0000152821 Malus domestica MDP0000152821 I 0.750
mgf019100m Mimulus guttatus mgf019100m N 0.750
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.750
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.750
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.750
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.750
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.750
Solyc05g051830.2 Solanum lycopersicum Solyc05g051830.2 N 0.750
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.750
Bo6g121640 Brassica oleracea Bo6g121640 I 0.750
F775_03584 Aegilops tauschii F775_03584 I 0.750
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.750
AGL66 Arabidopsis thaliana AT1G77980 I 0.750
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.750
Bra015643 Brassica rapa Bra015643 I 0.750
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.750
SELMODRAFT_451128 Selaginella moellendorffii SELMODRAFT_451128 I 0.729
SELMODRAFT_449788 Selaginella moellendorffii SELMODRAFT_449788 I 0.729
PK10594.1 Cannabis sativa PK10594.1 I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
TCM_034757 Theobroma cacao TCM_034757 I 0.729
MDP0000179718 Malus domestica MDP0000179718 I 0.727
Bo00962s030 Brassica oleracea Bo00962s030 I 0.708
Bra013028 Brassica rapa Bra013028 I 0.708
Bra037895 Brassica rapa Bra037895 I 0.708
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
PK21701.1 Cannabis sativa PK21701.1 I 0.708
Bo7g097810 Brassica oleracea Bo7g097810 I 0.708
PK19764.1 Cannabis sativa PK19764.1 I 0.708
Thhalv10028938m.g Eutrema salsugineum Thhalv10028938m.g I 0.708
Bo6g121610 Brassica oleracea Bo6g121610 I 0.708
STK Arabidopsis thaliana AT4G09960 I 0.708
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.708
AGL67 Arabidopsis thaliana AT1G77950 D 0.708
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.708
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.708
Cagra.4960s0003 Capsella grandiflora Cagra.4960s0003 I 0.708
Bostr.25463s0328 Boechera stricta Bostr.25463s0328 I 0.708
Cla002664 Citrullus lanatus Cla002664 I 0.708
mgf006616m Mimulus guttatus mgf006616m I 0.708
mgf021705m Mimulus guttatus mgf021705m I 0.708
Carubv10003771m.g Capsella rubella Carubv10003771m.g I 0.708
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.708
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.708
STK Arabidopsis lyrata fgenesh2_kg.6__2975__AT4G09960.3 I 0.708
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.708