e_gw1.9.299.1 (Sporobolomyces roseus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 e_gw1.9.299.1 T257318_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.750 0.750
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.750 0.750
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.750 0.750
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.750 0.750
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.750 0.750
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.9.299.1 MADS box 29 76

Links

Other MADS box family TFs
Other Sporobolomyces roseus TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RHTO_03422 Rhodosporidium toruloides RHTO_03422 I 0.833
H311_00382 Anncaliia algerae H311_00382 I 0.778
MVLG_07052 Microbotryum violaceum MVLG_07052 N 0.771
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.759
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.759
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.759
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.759
Kpol_262p3 Vanderwaltozyma polyspora Kpol_262p3 I 0.750
MCM1 Saccharomyces cerevisiae YMR043W D 0.750
ZBAI_08535 Zygosaccharomyces bailii ZBAI_08535 I 0.750
NCAS_0A12970 Naumovozyma castellii NCAS_0A12970 I 0.750
ZYRO0F00726g Zygosaccharomyces rouxii ZYRO0F00726g I 0.750
ZBAI_03537 Zygosaccharomyces bailii ZBAI_03537 I 0.750
TPHA_0N01520 Tetrapisispora phaffii TPHA_0N01520 I 0.750
TBLA_0B06860 Tetrapisispora blattae TBLA_0B06860 I 0.750
SU7_2521 Saccharomyces arboricola SU7_2521 I 0.750
SKUD_077902 Saccharomyces kudriavzevii SKUD_077902 I 0.750
TBLA_0G01960 Tetrapisispora blattae TBLA_0G01960 I 0.750
TDEL_0B07010 Torulaspora delbrueckii TDEL_0B07010 I 0.750
NDAI_0C00510 Naumovozyma dairenensis NDAI_0C00510 I 0.750
KNAG_0H00480 Kazachstania naganishii KNAG_0H00480 I 0.750
TPHA_0C02530 Tetrapisispora phaffii TPHA_0C02530 I 0.750
NDAI_0B01280 Naumovozyma dairenensis NDAI_0B01280 I 0.750
Kpol_1073p26 Vanderwaltozyma polyspora Kpol_1073p26 I 0.750
CAGL0F06237g Candida glabrata CAGL0F06237g I 0.750
Scas_Contig709.26 Saccharomyces castellii Scas_Contig709.26 I 0.750
17142_YMR043W Saccharomyces paradoxus 17142_YMR043W I 0.750
16570_YMR043W Saccharomyces mikatae 16570_YMR043W I 0.750
18568_YMR043W Saccharomyces bayanus 18568_YMR043W I 0.750
KAFR_0A03700 Kazachstania africana KAFR_0A03700 I 0.750
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I 0.729
CAGL0I10769g Candida glabrata CAGL0I10769g I 0.729
KAFR_0B05280 Kazachstania africana KAFR_0B05280 I 0.729
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I 0.729
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.708
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.708
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.708
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.708
SCLCIDRAFT_1210894 Scleroderma citrinum SCLCIDRAFT_1210894 I 0.708
SERLA73DRAFT_39032 Serpula lacrymans SERLA73DRAFT_39032 I 0.708
e_gw1.7.530.1 Heterobasidion annosum e_gw1.7.530.1 I 0.708
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.708
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.708
gw1.5.808.1 Sporobolomyces roseus gw1.5.808.1 I 0.708
gww2.8.413.1 Phanerochaete chrysosporium gww2.8.413.1 I 0.708
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.708
PredSwiss_ASS2010_3106.1 Pneumocystis carinii PredSwiss_ASS2010_3106.1 I 0.708
PredSwiss_CON2646.1 Pneumocystis carinii PredSwiss_CON2646.1 I 0.708
PredSwiss_CON3093.1 Pneumocystis carinii PredSwiss_CON3093.1 I 0.708
V565_011770 Rhizoctonia solani V565_011770 I 0.708
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.708
PILCRDRAFT_38299 Piloderma croceum PILCRDRAFT_38299 I 0.708
HETIRDRAFT_173338 Heterobasidion irregulare HETIRDRAFT_173338 I 0.708
GYMLUDRAFT_46537 Gymnopus luxurians GYMLUDRAFT_46537 I 0.708
FOMPIDRAFT_1033211 Fomitopsis pinicola FOMPIDRAFT_1033211 I 0.708
HPODL_04904 Ogataea parapolymorpha HPODL_04904 I 0.708
HYDPIDRAFT_90535 Hydnomerulius pinastri HYDPIDRAFT_90535 I 0.708
K443DRAFT_676848 Laccaria amethystina K443DRAFT_676848 I 0.708
JAAARDRAFT_96904 Jaapia argillacea JAAARDRAFT_96904 I 0.708
DACRYDRAFT_57073 Dacryopinax sp DACRYDRAFT_57073 I 0.708
CY34DRAFT_801376 Suillus luteus CY34DRAFT_801376 I 0.708
AGABI2DRAFT_193683 Agaricus bisporus AGABI2DRAFT_193683 I 0.708
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.708
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.708
BOTBODRAFT_40971 Botryobasidium botryosum BOTBODRAFT_40971 I 0.708
CaO19.7025 Candida albicans CaO19.7025 I 0.708
CD36_70830 Candida dubliniensis CD36_70830 I 0.708
CC1G_07160 Coprinopsis cinerea CC1G_07160 I 0.708
LACBIDRAFT_150186 Laccaria bicolor LACBIDRAFT_150186 I 0.708
M378DRAFT_61805 Amanita muscaria M378DRAFT_61805 I 0.708
PLEOSDRAFT_1057892 Pleurotus ostreatus PLEOSDRAFT_1057892 I 0.708
PISMIDRAFT_684247 Pisolithus microcarpus PISMIDRAFT_684247 I 0.708
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.708
PNEG_00576 Pneumocystis murina PNEG_00576 I 0.708
POSPLDRAFT_38388 Postia placenta POSPLDRAFT_38388 I 0.708
RHTO_07423 Rhodosporidium toruloides RHTO_07423 I 0.708
PSEUBRA_SCAF3g03688 Pseudozyma brasiliensis PSEUBRA_SCAF3g03688 I 0.708
PIIN_00796 Piriformospora indica PIIN_00796 I 0.708
PHLGIDRAFT_93172 Phlebiopsis gigantea PHLGIDRAFT_93172 I 0.708
M408DRAFT_79374 Serendipita vermifera M408DRAFT_79374 I 0.708
M407DRAFT_70058 Tulasnella calospora M407DRAFT_70058 I 0.708
M404DRAFT_76978 Pisolithus tinctorius M404DRAFT_76978 I 0.708
M413DRAFT_154651 Hebeloma cylindrosporum M413DRAFT_154651 I 0.708
Moror_12500 Moniliophthora roreri Moror_12500 I 0.708
PAXRUDRAFT_829045 Paxillus rubicundulus PAXRUDRAFT_829045 I 0.708
MVLG_06278 Microbotryum violaceum MVLG_06278 I 0.708
SCHCODRAFT_67012 Schizophyllum commune SCHCODRAFT_67012 I 0.708