estExt_gwp_gw1.C_340302 (Physcomitrella patens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_gwp_gw1.C_340302 T257342_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708 0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708 0.708
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_340302 MADS box 10 57

Links

Other MADS box family TFs
Other Physcomitrella patens TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.938
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.938
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.938
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.938
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.917
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.917
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.917
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.917
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.896
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.875
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.875
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.833
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.812
Cla014721 Citrullus lanatus Cla014721 I 0.812
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.792
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.792
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.792
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.792
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.792
Ca_01572 Cicer arietinum Ca_01572 I 0.792
Pm005355 Prunus mume Pm005355 I 0.792
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.792
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.792
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.792
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.792
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.792
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.771
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.771
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.771
OS06G0223300 Oryza sativa OS06G0223300 I 0.771
OS08G0494100 Oryza sativa OS08G0494100 I 0.771
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.771
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.771
OBART08G19110 Oryza barthii OBART08G19110 I 0.771
OBART06G07860 Oryza barthii OBART06G07860 I 0.771
OB08G26170 Oryza brachyantha OB08G26170 I 0.771
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.771
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.771
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.771
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.771
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.771
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.771
TCM_001182 Theobroma cacao TCM_001182 I 0.771
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.771
MDP0000243965 Malus domestica MDP0000243965 I 0.771
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.771
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.771
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.771
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.771
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.771
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.771
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.771
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.771
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.771
30170.m013776 Ricinus communis 30170.m013776 I 0.771
TCM_034970 Theobroma cacao TCM_034970 I 0.771
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.771
Si013985m.g Setaria italica Si013985m.g I 0.771
Si008439m.g Setaria italica Si008439m.g I 0.771
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.771
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.771
29908.m005982 Ricinus communis 29908.m005982 I 0.771
Pm019181 Prunus mume Pm019181 I 0.771
OB06G17440 Oryza brachyantha OB06G17440 I 0.771
Ca_24539 Cicer arietinum Ca_24539 I 0.771
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.771
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.771
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.771
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.771
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.771
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.771
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.771
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.771
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.771
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.771
SELMODRAFT_449788 Selaginella moellendorffii SELMODRAFT_449788 I 0.766
SELMODRAFT_451128 Selaginella moellendorffii SELMODRAFT_451128 I 0.766
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.758
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.750
AGL104 Arabidopsis thaliana AT1G22130 I 0.750
mgf021705m Mimulus guttatus mgf021705m I 0.750
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.750
Bo8g071330 Brassica oleracea Bo8g071330 I 0.750
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.750
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.750
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.750
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.750
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.750
Bo7g060150 Brassica oleracea Bo7g060150 I 0.750
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.750
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.750
Bra012308 Brassica rapa Bra012308 I 0.750
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.750
mgf017317m Mimulus guttatus mgf017317m I 0.750
Bra016386 Brassica rapa Bra016386 I 0.750
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.750
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.750
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.745
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.745
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.729
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.729
Bra015643 Brassica rapa Bra015643 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.729
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.729
Bo6g121640 Brassica oleracea Bo6g121640 I 0.729
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.729
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.729
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.729
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.729
F775_03584 Aegilops tauschii F775_03584 I 0.729
Solyc05g051830.2 Solanum lycopersicum Solyc05g051830.2 N 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MDP0000152821 Malus domestica MDP0000152821 I 0.729
GSMUA_Achr11G07760_001 Musa acuminata GSMUA_Achr11G07760_001 I 0.729
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.729
mgf019100m Mimulus guttatus mgf019100m N 0.729
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.729
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.729
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.729
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.729
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.729
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.729
AGL66 Arabidopsis thaliana AT1G77980 I 0.729
PK10594.1 Cannabis sativa PK10594.1 I 0.729
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.729
Cflo_01183--XP_397383.2_APIME Camponotus floridanus Cflo_01183--XP_397383.2_APIME I 0.724
PPAI010474 Phlebotomus papatasi PPAI010474 I 0.724
Hsal_08987--XP_397383.2_APIME Harpegnathos saltator Hsal_08987--XP_397383.2_APIME I 0.724
LLOJ006114 Lutzomyia longipalpis LLOJ006114 I 0.724
SINV16219 Solenopsis invicta SINV16219 I 0.724
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.717
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.717
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.717
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.717
Si028357m.g Setaria italica Si028357m.g N 0.717
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.717
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.717
F775_13266 Aegilops tauschii F775_13266 I 0.717
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
Cagra.4960s0003 Capsella grandiflora Cagra.4960s0003 I 0.708
Carubv10003771m.g Capsella rubella Carubv10003771m.g I 0.708
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.708
mgf007278m Mimulus guttatus mgf007278m I 0.708
mgf006616m Mimulus guttatus mgf006616m I 0.708
Bostr.25463s0328 Boechera stricta Bostr.25463s0328 I 0.708
mgf001713m Mimulus guttatus mgf001713m I 0.708
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.708
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.708
Bo9g014270 Brassica oleracea Bo9g014270 I 0.708
Gorai.004G155700 Gossypium raimondii Gorai.004G155700 I 0.708
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.708
AGL6 Arabidopsis thaliana AT2G45650 D 0.708
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.708
STK Arabidopsis thaliana AT4G09960 I 0.708
MDP0000326906 Malus domestica MDP0000326906 I 0.708
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.708
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.708
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.708
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.708
PDK_20s1674411g001 Phoenix dactylifera PDK_20s1674411g001 I 0.708
PK19764.1 Cannabis sativa PK19764.1 I 0.708
PK14825.1 Cannabis sativa PK14825.1 I 0.708
Thhalv10028938m.g Eutrema salsugineum Thhalv10028938m.g I 0.708
PK12001.1 Cannabis sativa PK12001.1 I 0.708
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.708
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
Bo4g024840 Brassica oleracea Bo4g024840 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.708
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.708
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.708
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.708
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.708
Gorai.008G242700 Gossypium raimondii Gorai.008G242700 I 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Bo00962s030 Brassica oleracea Bo00962s030 I 0.708
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.708
MADS6 Oryza sativa OS02G0682200 D 0.708
OS04G0580700 Oryza sativa OS04G0580700 I 0.708
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.708
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.708
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.708
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.708
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.708
PRUPE_ppa022942mg Prunus persica PRUPE_ppa022942mg I 0.708
GSMUA_Achr10G06580_001 Musa acuminata GSMUA_Achr10G06580_001 I 0.708
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.708
POPTR_0008s09780 Populus trichocarpa POPTR_0008s09780 I 0.708
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.708
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.708
OBART04G22790 Oryza barthii OBART04G22790 I 0.708
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.708
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.708
OBART02G28030 Oryza barthii OBART02G28030 I 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.708
OB04G29660 Oryza brachyantha OB04G29660 I 0.708
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.708
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.708
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.708
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.708
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.708
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.708
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.708
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.708
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.708
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.708
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.708
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.708
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.708
OB02G35340 Oryza brachyantha OB02G35340 I 0.708
F775_31247 Aegilops tauschii F775_31247 I 0.708
STK Arabidopsis lyrata fgenesh2_kg.6__2975__AT4G09960.3 I 0.708
Cla007056 Citrullus lanatus Cla007056 I 0.708
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.708
Cla002664 Citrullus lanatus Cla002664 I 0.708
Cla006333 Citrullus lanatus Cla006333 I 0.708
30174.m008934 Ricinus communis 30174.m008934 I 0.708
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.708
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.708
Bra037895 Brassica rapa Bra037895 I 0.708
Bra026507 Brassica rapa Bra026507 I 0.708
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.708
Cucsa.251170 Cucumis sativus Cucsa.251170 I 0.708
Cucsa.113420 Cucumis sativus Cucsa.113420 I 0.708
Cucsa.202790 Cucumis sativus Cucsa.202790 I 0.708
Ca_06280 Cicer arietinum Ca_06280 I 0.708
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.708
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.708
GLYMA16G32540 Glycine max GLYMA16G32540 I 0.708
TCM_005458 Theobroma cacao TCM_005458 I 0.708
Si018160m.g Setaria italica Si018160m.g I 0.708
GLYMA20G29250 Glycine max GLYMA20G29250 I 0.708
GRMZM2G003514 Zea mays GRMZM2G003514 I 0.708
Si010898m.g Setaria italica Si010898m.g I 0.708
TCM_034757 Theobroma cacao TCM_034757 I 0.708
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.708
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.708
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.708
VIT_07s0129g00650 Vitis vinifera VIT_07s0129g00650 I 0.708
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.708
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.708
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.708
Bra004927 Brassica rapa Bra004927 I 0.708