CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_gwp_gw1.C_340302
(
Physcomitrella patens
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
estExt_gwp_gw1.C_340302
T257342_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708
0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708
0.708
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_gwp_gw1.C_340302
MADS box
10
57
KIENSANRQVTYSKRRNGLTKKAYELSVLCDIDLALIMFSPSGKLTQY
Links
Other
MADS box
family TFs
Other
Physcomitrella patens
TFs
259 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh1_pg.scaffold_163000049
Physcomitrella patens
fgenesh1_pg.scaffold_163000049
I
0.938
estExt_fgenesh1_pg.C_1180093
Physcomitrella patens
estExt_fgenesh1_pg.C_1180093
I
0.938
e_gw1.273.6.1
Physcomitrella patens
e_gw1.273.6.1
I
0.938
e_gw1.55.5.1
Physcomitrella patens
e_gw1.55.5.1
I
0.938
estExt_Genewise1.C_80073
Physcomitrella patens
estExt_Genewise1.C_80073
I
0.917
estExt_fgenesh1_pm.C_80015
Physcomitrella patens
estExt_fgenesh1_pm.C_80015
I
0.917
estExt_fgenesh1_kg.C_550007
Physcomitrella patens
estExt_fgenesh1_kg.C_550007
I
0.917
estExt_gwp_gw1.C_900087
Physcomitrella patens
estExt_gwp_gw1.C_900087
I
0.917
estExt_gwp_gw1.C_1630046
Physcomitrella patens
estExt_gwp_gw1.C_1630046
I
0.896
SELMODRAFT_449720
Selaginella moellendorffii
SELMODRAFT_449720
N
0.875
SELMODRAFT_449721
Selaginella moellendorffii
SELMODRAFT_449721
N
0.875
AMTR_s00010p00214260
Amborella trichopoda
AMTR_s00010p00214260
I
0.833
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.812
Cla014721
Citrullus lanatus
Cla014721
I
0.812
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.792
SapurV1A.0010s0340
Salix purpurea
SapurV1A.0010s0340
I
0.792
cassava32041.m1
Manihot esculenta
cassava32041.m1
I
0.792
GLYMA04G04641
Glycine max
GLYMA04G04641
I
0.792
GSMUA_Achr3G04450_001
Musa acuminata
GSMUA_Achr3G04450_001
I
0.792
Ca_01572
Cicer arietinum
Ca_01572
I
0.792
Pm005355
Prunus mume
Pm005355
I
0.792
OMERI06G09450
Oryza meridionalis
OMERI06G09450
I
0.792
POPTR_0002s09290
Populus trichocarpa
POPTR_0002s09290
I
0.792
Aquca_014_00554
Aquilegia coerulea
Aquca_014_00554
I
0.792
PRUPE_ppa023054mg
Prunus persica
PRUPE_ppa023054mg
I
0.792
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.792
ORUFI08G21330
Oryza rufipogon
ORUFI08G21330
I
0.771
Sb10g007810
Sorghum bicolor
Sb10g007810
I
0.771
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.771
OS06G0223300
Oryza sativa
OS06G0223300
I
0.771
OS08G0494100
Oryza sativa
OS08G0494100
I
0.771
OPUNC08G17110
Oryza punctata
OPUNC08G17110
I
0.771
OGLUM06G08350
Oryza glumaepatula
OGLUM06G08350
I
0.771
OBART08G19110
Oryza barthii
OBART08G19110
I
0.771
OBART06G07860
Oryza barthii
OBART06G07860
I
0.771
OB08G26170
Oryza brachyantha
OB08G26170
I
0.771
OGLUM08G20110
Oryza glumaepatula
OGLUM08G20110
I
0.771
ONIVA06G09080
Oryza nivara
ONIVA06G09080
I
0.771
ORGLA08G0167200
Oryza glaberrima
ORGLA08G0167200
I
0.771
ORGLA06G0074200
Oryza glaberrima
ORGLA06G0074200
I
0.771
Pavir.J32837
Panicum virgatum
Pavir.J32837
I
0.771
ORUFI06G08110
Oryza rufipogon
ORUFI06G08110
I
0.771
TCM_001182
Theobroma cacao
TCM_001182
I
0.771
Lus10018714.g
Linum usitatissimum
Lus10018714.g
I
0.771
MDP0000243965
Malus domestica
MDP0000243965
I
0.771
orange1.1g039560m.g
Citrus sinensis
orange1.1g039560m.g
I
0.771
Pavir.Db01574
Panicum virgatum
Pavir.Db01574
I
0.771
Gorai.009G216900
Gossypium raimondii
Gorai.009G216900
I
0.771
Gorai.005G100600
Gossypium raimondii
Gorai.005G100600
I
0.771
Cagra.1707s0007
Capsella grandiflora
Cagra.1707s0007
I
0.771
Ciclev10003964m.g
Citrus clementina
Ciclev10003964m.g
I
0.771
evm.TU.supercontig_21.133
Carica papaya
evm.TU.supercontig_21.133
I
0.771
gene31290-v1.0-hybrid
Fragaria vesca
gene31290-v1.0-hybrid
I
0.771
cassava25616.m1
Manihot esculenta
cassava25616.m1
I
0.771
30170.m013776
Ricinus communis
30170.m013776
I
0.771
TCM_034970
Theobroma cacao
TCM_034970
I
0.771
Carubv10010907m.g
Capsella rubella
Carubv10010907m.g
I
0.771
Si013985m.g
Setaria italica
Si013985m.g
I
0.771
Si008439m.g
Setaria italica
Si008439m.g
I
0.771
VIT_07s0031g01140
Vitis vinifera
VIT_07s0031g01140
I
0.771
VIT_18s0001g09540
Vitis vinifera
VIT_18s0001g09540
I
0.771
29908.m005982
Ricinus communis
29908.m005982
I
0.771
Pm019181
Prunus mume
Pm019181
I
0.771
OB06G17440
Oryza brachyantha
OB06G17440
I
0.771
Ca_24539
Cicer arietinum
Ca_24539
I
0.771
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.771
Solyc04g078300.2
Solanum lycopersicum
Solyc04g078300.2
I
0.771
LPERR08G16000
Leersia perrieri
LPERR08G16000
I
0.771
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.771
GRMZM2G334225
Zea mays
GRMZM2G334225
I
0.771
BGIOSGA003731
Oryza indica
BGIOSGA003731
I
0.771
GSMUA_Achr9G13010_001
Musa acuminata
GSMUA_Achr9G13010_001
I
0.771
GRMZM2G152415
Zea mays
GRMZM2G152415
I
0.771
MTR_3g102570
Medicago truncatula
MTR_3g102570
I
0.771
BGIOSGA026745
Oryza indica
BGIOSGA026745
I
0.771
SELMODRAFT_449788
Selaginella moellendorffii
SELMODRAFT_449788
I
0.766
SELMODRAFT_451128
Selaginella moellendorffii
SELMODRAFT_451128
I
0.766
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.758
orange1.1g046530m.g
Citrus sinensis
orange1.1g046530m.g
I
0.750
AGL104
Arabidopsis thaliana
AT1G22130
I
0.750
mgf021705m
Mimulus guttatus
mgf021705m
I
0.750
Ciclev10001730m.g
Citrus clementina
Ciclev10001730m.g
I
0.750
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.750
Lus10016810.g
Linum usitatissimum
Lus10016810.g
I
0.750
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.750
Gorai.005G093000
Gossypium raimondii
Gorai.005G093000
I
0.750
cassava22012.m1
Manihot esculenta
cassava22012.m1
I
0.750
GLYMA14G34160
Glycine max
GLYMA14G34160
I
0.750
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.750
POPTR_0007s05980
Populus trichocarpa
POPTR_0007s05980
I
0.750
Lus10022506.g
Linum usitatissimum
Lus10022506.g
I
0.750
Bra012308
Brassica rapa
Bra012308
I
0.750
OMERI08G15140
Oryza meridionalis
OMERI08G15140
I
0.750
mgf017317m
Mimulus guttatus
mgf017317m
I
0.750
Bra016386
Brassica rapa
Bra016386
I
0.750
SapurV1A.0293s0130
Salix purpurea
SapurV1A.0293s0130
I
0.750
ONIVA08G21050
Oryza nivara
ONIVA08G21050
I
0.750
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.745
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.745
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.739
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.739
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.729
PK21701.1
Cannabis sativa
PK21701.1
I
0.729
Gorai.007G242000
Gossypium raimondii
Gorai.007G242000
I
0.729
Bra015643
Brassica rapa
Bra015643
I
0.729
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.729
Traes_4DS_A28BC582A
Triticum aestivum
Traes_4DS_A28BC582A
I
0.729
GLYMA13G02170
Glycine max
GLYMA13G02170
I
0.729
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.729
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.729
TRIUR3_20588
Triticum urartu
TRIUR3_20588
I
0.729
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.729
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.729
F775_03584
Aegilops tauschii
F775_03584
I
0.729
Solyc05g051830.2
Solanum lycopersicum
Solyc05g051830.2
N
0.729
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.729
MDP0000152821
Malus domestica
MDP0000152821
I
0.729
GSMUA_Achr11G07760_001
Musa acuminata
GSMUA_Achr11G07760_001
I
0.729
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.729
mgf019100m
Mimulus guttatus
mgf019100m
N
0.729
BRADI3G39177
Brachypodium distachyon
BRADI3G39177
I
0.729
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.729
Lus10024823.g
Linum usitatissimum
Lus10024823.g
I
0.729
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.729
PRUPE_ppa020874mg
Prunus persica
PRUPE_ppa020874mg
I
0.729
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.729
AGL66
Arabidopsis thaliana
AT1G77980
I
0.729
PK10594.1
Cannabis sativa
PK10594.1
I
0.729
Bostr.12659s0064
Boechera stricta
Bostr.12659s0064
I
0.729
Cflo_01183--XP_397383.2_APIME
Camponotus floridanus
Cflo_01183--XP_397383.2_APIME
I
0.724
PPAI010474
Phlebotomus papatasi
PPAI010474
I
0.724
Hsal_08987--XP_397383.2_APIME
Harpegnathos saltator
Hsal_08987--XP_397383.2_APIME
I
0.724
LLOJ006114
Lutzomyia longipalpis
LLOJ006114
I
0.724
SINV16219
Solenopsis invicta
SINV16219
I
0.724
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.724
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.717
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.717
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.717
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.717
Si028357m.g
Setaria italica
Si028357m.g
N
0.717
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.717
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.717
F775_13266
Aegilops tauschii
F775_13266
I
0.717
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
Cagra.4960s0003
Capsella grandiflora
Cagra.4960s0003
I
0.708
Carubv10003771m.g
Capsella rubella
Carubv10003771m.g
I
0.708
Bostr.25993s0209
Boechera stricta
Bostr.25993s0209
I
0.708
mgf007278m
Mimulus guttatus
mgf007278m
I
0.708
mgf006616m
Mimulus guttatus
mgf006616m
I
0.708
Bostr.25463s0328
Boechera stricta
Bostr.25463s0328
I
0.708
mgf001713m
Mimulus guttatus
mgf001713m
I
0.708
Cagra.0050s0135
Capsella grandiflora
Cagra.0050s0135
I
0.708
Aquca_022_00241
Aquilegia coerulea
Aquca_022_00241
I
0.708
Bo9g014270
Brassica oleracea
Bo9g014270
I
0.708
Gorai.004G155700
Gossypium raimondii
Gorai.004G155700
I
0.708
Pavir.Ab02707
Panicum virgatum
Pavir.Ab02707
I
0.708
AGL6
Arabidopsis thaliana
AT2G45650
D
0.708
Pavir.Aa00924
Panicum virgatum
Pavir.Aa00924
I
0.708
STK
Arabidopsis thaliana
AT4G09960
I
0.708
MDP0000326906
Malus domestica
MDP0000326906
I
0.708
orange1.1g037149m.g
Citrus sinensis
orange1.1g037149m.g
I
0.708
SapurV1A.0578s0120
Salix purpurea
SapurV1A.0578s0120
I
0.708
Thhalv10001597m.g
Eutrema salsugineum
Thhalv10001597m.g
I
0.708
PDK_20s1538871g001
Phoenix dactylifera
PDK_20s1538871g001
I
0.708
PDK_20s1674411g001
Phoenix dactylifera
PDK_20s1674411g001
I
0.708
PK19764.1
Cannabis sativa
PK19764.1
I
0.708
PK14825.1
Cannabis sativa
PK14825.1
I
0.708
Thhalv10028938m.g
Eutrema salsugineum
Thhalv10028938m.g
I
0.708
PK12001.1
Cannabis sativa
PK12001.1
I
0.708
BGIOSGA008820
Oryza indica
BGIOSGA008820
I
0.708
BGIOSGA016980
Oryza indica
BGIOSGA016980
I
0.708
evm.TU.supercontig_21.11
Carica papaya
evm.TU.supercontig_21.11
I
0.708
Bo4g024840
Brassica oleracea
Bo4g024840
I
0.708
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.708
Eucgr.I00556
Eucalyptus grandis
Eucgr.I00556
I
0.708
Ciclev10021911m.g
Citrus clementina
Ciclev10021911m.g
I
0.708
Eucgr.B00633
Eucalyptus grandis
Eucgr.B00633
I
0.708
evm.TU.supercontig_414.3
Carica papaya
evm.TU.supercontig_414.3
I
0.708
gene19428-v1.0-hybrid
Fragaria vesca
gene19428-v1.0-hybrid
I
0.708
Gorai.007G093700
Gossypium raimondii
Gorai.007G093700
I
0.708
Gorai.008G242700
Gossypium raimondii
Gorai.008G242700
I
0.708
Bra000392
Brassica rapa
Bra000392
I
0.708
Gorai.001G172200
Gossypium raimondii
Gorai.001G172200
I
0.708
Bo00962s030
Brassica oleracea
Bo00962s030
I
0.708
Carubv10023910m.g
Capsella rubella
Carubv10023910m.g
I
0.708
Pm018087
Prunus mume
Pm018087
I
0.708
GSMUA_Achr2G10250_001
Musa acuminata
GSMUA_Achr2G10250_001
I
0.708
MADS6
Oryza sativa
OS02G0682200
D
0.708
OS04G0580700
Oryza sativa
OS04G0580700
I
0.708
GSMUA_Achr4G30120_001
Musa acuminata
GSMUA_Achr4G30120_001
I
0.708
ORUFI04G24470
Oryza rufipogon
ORUFI04G24470
I
0.708
ORGLA04G0197900
Oryza glaberrima
ORGLA04G0197900
I
0.708
LPERR02G22830
Leersia perrieri
LPERR02G22830
I
0.708
ORUFI02G29550
Oryza rufipogon
ORUFI02G29550
I
0.708
GSMUA_Achr2G04350_001
Musa acuminata
GSMUA_Achr2G04350_001
I
0.708
GSMUA_Achr2G04340_001
Musa acuminata
GSMUA_Achr2G04340_001
I
0.708
PRUPE_ppa022942mg
Prunus persica
PRUPE_ppa022942mg
I
0.708
GSMUA_Achr10G06580_001
Musa acuminata
GSMUA_Achr10G06580_001
I
0.708
Sb04g031750
Sorghum bicolor
Sb04g031750
I
0.708
PRUPE_ppa019932mg
Prunus persica
PRUPE_ppa019932mg
I
0.708
GSMUA_Achr10G21480_001
Musa acuminata
GSMUA_Achr10G21480_001
I
0.708
PGSC0003DMG400016203
Solanum tuberosum
PGSC0003DMG400016203
I
0.708
POPTR_0008s09780
Populus trichocarpa
POPTR_0008s09780
I
0.708
ORGLA02G0240800
Oryza glaberrima
ORGLA02G0240800
I
0.708
LPERR04G18560
Leersia perrieri
LPERR04G18560
I
0.708
OBART04G22790
Oryza barthii
OBART04G22790
I
0.708
OGLUM02G28590
Oryza glumaepatula
OGLUM02G28590
I
0.708
OGLUM04G22680
Oryza glumaepatula
OGLUM04G22680
I
0.708
OBART02G28030
Oryza barthii
OBART02G28030
I
0.708
MTR_7g075850
Medicago truncatula
MTR_7g075850
I
0.708
OB04G29660
Oryza brachyantha
OB04G29660
I
0.708
MTR_8g033270
Medicago truncatula
MTR_8g033270
I
0.708
OLONG_003266
Oryza longistaminata
OLONG_003266
I
0.708
MLOC_52944
Hordeum vulgare
MLOC_52944
I
0.708
MAD17_ORYSJ
Oryza sativa
MAD17_ORYSJ
D
0.708
OPUNC02G25740
Oryza punctata
OPUNC02G25740
I
0.708
OPUNC04G20380
Oryza punctata
OPUNC04G20380
I
0.708
ONIVA04G21940
Oryza nivara
ONIVA04G21940
I
0.708
ONIVA02G31130
Oryza nivara
ONIVA02G31130
I
0.708
OMERI02G27210
Oryza meridionalis
OMERI02G27210
I
0.708
OMERI04G19060
Oryza meridionalis
OMERI04G19060
I
0.708
Sb06g026300
Sorghum bicolor
Sb06g026300
I
0.708
GRMZM2G160565
Zea mays
GRMZM2G160565
I
0.708
AGL6
Arabidopsis lyrata
fgenesh2_kg.4__2761__AT2G45650.1
I
0.708
OB02G35340
Oryza brachyantha
OB02G35340
I
0.708
F775_31247
Aegilops tauschii
F775_31247
I
0.708
STK
Arabidopsis lyrata
fgenesh2_kg.6__2975__AT4G09960.3
I
0.708
Cla007056
Citrullus lanatus
Cla007056
I
0.708
GLYMA03G02210
Glycine max
GLYMA03G02210
I
0.708
Cla002664
Citrullus lanatus
Cla002664
I
0.708
Cla006333
Citrullus lanatus
Cla006333
I
0.708
30174.m008934
Ricinus communis
30174.m008934
I
0.708
BRADI3G58220
Brachypodium distachyon
BRADI3G58220
I
0.708
BRADI3G51800
Brachypodium distachyon
BRADI3G51800
I
0.708
Bra037895
Brassica rapa
Bra037895
I
0.708
Bra026507
Brassica rapa
Bra026507
I
0.708
Cucsa.392160
Cucumis sativus
Cucsa.392160
I
0.708
Cucsa.251170
Cucumis sativus
Cucsa.251170
I
0.708
Cucsa.113420
Cucumis sativus
Cucsa.113420
I
0.708
Cucsa.202790
Cucumis sativus
Cucsa.202790
I
0.708
Ca_06280
Cicer arietinum
Ca_06280
I
0.708
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.708
Solyc11g010570.1
Solanum lycopersicum
Solyc11g010570.1
I
0.708
GLYMA16G32540
Glycine max
GLYMA16G32540
I
0.708
TCM_005458
Theobroma cacao
TCM_005458
I
0.708
Si018160m.g
Setaria italica
Si018160m.g
I
0.708
GLYMA20G29250
Glycine max
GLYMA20G29250
I
0.708
GRMZM2G003514
Zea mays
GRMZM2G003514
I
0.708
Si010898m.g
Setaria italica
Si010898m.g
I
0.708
TCM_034757
Theobroma cacao
TCM_034757
I
0.708
Traes_6AL_1F7DAC5FA
Triticum aestivum
Traes_6AL_1F7DAC5FA
I
0.708
VIT_15s0048g01270
Vitis vinifera
VIT_15s0048g01270
I
0.708
VIT_18s0001g04810
Vitis vinifera
VIT_18s0001g04810
I
0.708
GLYMA07G08890
Glycine max
GLYMA07G08890
I
0.708
VIT_07s0129g00650
Vitis vinifera
VIT_07s0129g00650
I
0.708
TRIUR3_22246
Triticum urartu
TRIUR3_22246
I
0.708
Traes_6BL_7C6B17284
Triticum aestivum
Traes_6BL_7C6B17284
I
0.708
Traes_6DL_5B1D4DBF5
Triticum aestivum
Traes_6DL_5B1D4DBF5
I
0.708
Bra004927
Brassica rapa
Bra004927
I
0.708