gww2.8.413.1 (Phanerochaete chrysosporium)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gww2.8.413.1 T257377_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.938 0.938
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.854 0.854
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.854 0.854
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.854 0.854
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.854 0.854
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.854 0.854
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.854 0.854
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.833 0.833
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.833 0.833
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.833 0.833
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.833 0.833
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.833 0.833
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.833 0.833
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.833 0.833
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.833 0.833
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.833 0.833
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.833 0.833
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.833 0.833
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.833 0.833
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.833 0.833
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.833 0.833
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.833 0.833
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.833 0.833
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.833 0.833
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.833 0.833
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.833 0.833
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.833 0.833
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.833 0.833
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.833 0.833
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.792 0.792
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.792 0.792
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gww2.8.413.1 MADS box 8 59

Links

Other MADS box family TFs
Other Phanerochaete chrysosporium TFs

464 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000006957 Ailuropoda melanoleuca ENSAMEG00000006957 I 0.000
Alligator_sinensis_CCG012951.1 Alligator sinensis Alligator_sinensis_CCG012951.1 I 0.000
ENSAPLG00000005775 Anas platyrhynchos ENSAPLG00000005775 I 0.000
ENSACAG00000002480 Anolis carolinensis ENSACAG00000002480 I 0.000
Afo_R014628 Aptenodytes forsteri Afo_R014628 I 0.000
ENSAMXG00000013017 Astyanax mexicanus ENSAMXG00000013017 I 0.000
ENSP00000331327-D1 Bos grunniens ENSP00000331327-D1 I 0.000
WT1 Bos taurus ENSBTAG00000047268 I 0.000
fgenesh2_pg.scaffold_80000039 Branchiostoma floridae fgenesh2_pg.scaffold_80000039 I 0.000
fgenesh2_pm.scaffold_110000013 Branchiostoma floridae fgenesh2_pm.scaffold_110000013 I 0.000
WT1 Callithrix jacchus ENSCJAG00000005900 I 0.000
Aan_R006616 Calypte anna Aan_R006616 I 0.000
WT1 Canis familiaris ENSCAFG00000007426 I 0.000
ENSCSAG00000005257 Chlorocebus sabaeus ENSCSAG00000005257 I 0.000
WT1 Choloepus hoffmanni ENSCHOG00000006244 I 0.000
wt1a Danio rerio ENSDARG00000031420 I 0.000
wt1b Danio rerio ENSDARG00000007990 I 0.000
WT1 Dasypus novemcinctus ENSDNOG00000003652 I 0.000
Wt1 Dipodomys ordii ENSDORG00000013725 I 0.000
WT1 Echinops telfairi ENSETEG00000000684 I 0.000
ENSECAG00000022308 Equus caballus ENSECAG00000022308 I 0.000
ENSEEUG00000007221 Erinaceus europaeus ENSEEUG00000007221 I 0.000
WT1 Felis catus ENSFCAG00000000308 I 0.000
ENSFALG00000010820 Ficedula albicollis ENSFALG00000010820 I 0.000
ENSGMOG00000012296 Gadus morhua ENSGMOG00000012296 I 0.000
WT1 Gallus gallus ENSGALG00000012115 I 0.000
wt1b Gasterosteus aculeatus ENSGACG00000016020 I 0.000
Gfo_R001970 Geospiza fortis Gfo_R001970 I 0.000
WT1 Gorilla gorilla ENSGGOG00000011586 I 0.000
WT1 Homo sapiens ENSG00000184937 D 0.000
ENSSTOG00000023716 Ictidomys tridecemlineatus ENSSTOG00000023716 I 0.000
ENSLACG00000016378 Latimeria chalumnae ENSLACG00000016378 I 0.000
ENSLOCG00000004537 Lepisosteus oculatus ENSLOCG00000004537 I 0.000
WT1 Loxodonta africana ENSLAFG00000006160 I 0.000
ENSP00000331327 Macaca fascicularis ENSP00000331327 I 0.000
WT1 Macaca mulatta ENSMMUG00000009881 I 0.000
ENSMGAG00000001489 Meleagris gallopavo ENSMGAG00000001489 I 0.000
WT1 Monodelphis domestica ENSMODG00000009646 I 0.000
ENSMPUG00000011307 Mustela putorius furo ENSMPUG00000011307 I 0.000
Wt1 Mus musculus ENSMUSG00000016458 D 0.000
WT1 Myotis lucifugus ENSMLUG00000027523 I 0.000
ENSNLEG00000017890 Nomascus leucogenys ENSNLEG00000017890 I 0.000
ENSOPRG00000015709 Ochotona princeps ENSOPRG00000015709 I 0.000
ENSONIG00000005545 Oreochromis niloticus ENSONIG00000005545 I 0.000
ENSONIG00000011043 Oreochromis niloticus ENSONIG00000011043 I 0.000
ENSOANG00000015147 Ornithorhynchus anatinus ENSOANG00000015147 I 0.000
WT1 Oryctolagus cuniculus ENSOCUG00000005882 I 0.000
wt1 Oryzias latipes ENSORLG00000009859 I 0.000
wt1 Oryzias latipes ENSORLG00000012424 I 0.000
WT1 Otolemur garnettii ENSOGAG00000007118 I 0.000
ENSOARG00000016334 Ovis aries ENSOARG00000016334 I 0.000
WT1 Pan troglodytes ENSPTRG00000003476 I 0.000
ENSPANG00000019482 Papio anubis ENSPANG00000019482 I 0.000
ENSPSIG00000013679 Pelodiscus sinensis ENSPSIG00000013679 I 0.000
ENSPMAG00000008950 Petromyzon marinus ENSPMAG00000008950 I 0.000
ENSPFOG00000010572 Poecilia formosa ENSPFOG00000010572 I 0.000
Pvit_09510 Pogona vitticeps Pvit_09510 I 0.000
ENSPPYG00000029822 Pongo abelii ENSPPYG00000029822 I 0.000
WT1 Procavia capensis ENSPCAG00000002213 I 0.000
Wt1 Rattus norvegicus ENSRNOG00000013074 I 0.000
ENSSHAG00000017390 Sarcophilus harrisii ENSSHAG00000017390 I 0.000
ENSSARG00000000207 Sorex araneus ENSSARG00000000207 I 0.000
WT1 Sus scrofa ENSSSCG00000013316 I 0.000
WT1 Taeniopygia guttata ENSTGUG00000004906 I 0.000
wt1b Takifugu rubripes ENSTRUG00000006559 I 0.000
wt1b Tetraodon nigroviridis ENSTNIG00000013806 I 0.000
ENSVPAG00000007788 Vicugna pacos ENSVPAG00000007788 I 0.000
wt1.L Xenopus laevis XB-GENE-6252376 I 0.000
B7ZSG3 Xenopus laevis B7ZSG3 I 0.000
wt1.S Xenopus laevis XB-GENE-864792 I 0.000
B5DE03 Xenopus tropicalis B5DE03 I 0.000
wt1 Xenopus tropicalis XB-GENE-484999 I 0.000
ENSXMAG00000005139 Xiphophorus maculatus ENSXMAG00000005139 I 0.000