CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf004425m
(
Mimulus guttatus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
mgf004425m
T257389_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf004425m
MADS box
10
57
RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGKPSIF
Links
Other
MADS box
family TFs
Other
Mimulus guttatus
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf000945m
Mimulus guttatus
mgf000945m
I
1.000
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.833
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.792
TCM_014051
Theobroma cacao
TCM_014051
I
0.792
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.792
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.792
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.792
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.771
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.771
30138.m004061
Ricinus communis
30138.m004061
I
0.771
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.771
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.750
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.750
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.750
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.750
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.750
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.750
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.750
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.750
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.750
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.750
Bra016544
Brassica rapa
Bra016544
I
0.750
PK21701.1
Cannabis sativa
PK21701.1
I
0.750
Bra031049
Brassica rapa
Bra031049
I
0.750
29813.m001508
Ricinus communis
29813.m001508
I
0.739
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.729
AGL65
Arabidopsis thaliana
AT1G18750
D
0.729
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.729
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.729
Bra025685
Brassica rapa
Bra025685
I
0.729
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.729
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.729
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.729
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.729
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.717
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.708
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.708
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.708
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.708
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.708
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.708
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.708
MDP0000146231
Malus domestica
MDP0000146231
I
0.708
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.708
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.708