CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf017475m
(
Mimulus guttatus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
mgf017475m
T257420_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708
0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708
0.708
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708
0.708
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf017475m
MADS box
10
57
EIENNSARMVCFSKRRSGLIKKAKELSVLCDVDVATIFFSKSGKLYQY
Links
Other
MADS box
family TFs
Other
Mimulus guttatus
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf021129m
Mimulus guttatus
mgf021129m
N
0.917
mgf023075m
Mimulus guttatus
mgf023075m
I
0.875
mgf020639m
Mimulus guttatus
mgf020639m
I
0.854
mgf024558m
Mimulus guttatus
mgf024558m
N
0.833
mgf026300m
Mimulus guttatus
mgf026300m
N
0.812
mgf025532m
Mimulus guttatus
mgf025532m
I
0.812
mgf020145m
Mimulus guttatus
mgf020145m
N
0.812
mgf023854m
Mimulus guttatus
mgf023854m
N
0.812
mgf020918m
Mimulus guttatus
mgf020918m
N
0.812
mgf013840m
Mimulus guttatus
mgf013840m
N
0.812
mgf022608m
Mimulus guttatus
mgf022608m
N
0.792
mgf010954m
Mimulus guttatus
mgf010954m
N
0.792
mgf021058m
Mimulus guttatus
mgf021058m
N
0.792
estExt_gwp_gw1.C_1630046
Physcomitrella patens
estExt_gwp_gw1.C_1630046
I
0.729
Carubv10027093m.g
Capsella rubella
Carubv10027093m.g
I
0.708
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.708
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.708
estExt_gwp_gw1.C_900087
Physcomitrella patens
estExt_gwp_gw1.C_900087
I
0.708
AGL15
Arabidopsis thaliana
AT5G13790
D
0.708
estExt_fgenesh1_kg.C_550007
Physcomitrella patens
estExt_fgenesh1_kg.C_550007
I
0.708
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.708